Variant site strain typer (VaST): Efficient strain typing using a minimal number of variant genomic sites

Keyphrases

• Strain Typing 100%
• PCR Amplicons 100%
• Amplicon Sequencing 100%
• Targeted PCR 100%
• Minimal number 100%
• Biodefense 66%
• Minimum number 66%
• Human Disease 33%
• Clinical Diagnostics 33%
• Sequencing Technology 33%
• Housekeeping Genes 33%
• Strain Level 33%
• Bacterial Species 33%
• Phylogenetic Position 33%
• Strain Identification 33%
• Species Level 33%
• Forensic 33%
• Panel Design 33%
• Pathogenic Species 33%
• Bacterial Strains 33%
• Number of Sites 33%
• Sequence Method 33%
• Outbreak Investigation 33%
• Unknown Samples 33%
• Unseen 33%
• Disease Outbreaks 33%
• Effective Tool 33%
• Strain-level Identification 33%
• Bacteria Identification 33%
• Conserved Primers 33%
• Diagnostic Investigations 33%
• Maximum Strain 33%
• Clinical Outbreak 33%

Biochemistry, Genetics and Molecular Biology

• Polymerase Chain Reaction 100%
• Amplicon Sequencing 100%
• Phylogeny 33%
• Housekeeping Gene 33%
• Strain Identification 33%
• Haplotype 33%