Using QIIME to analyze 16S rRNA gene sequences from microbial communities.

Justin Kuczynski; Jesse Stombaugh; William Anton Walters; Antonio González; J. Gregory Caporaso; Rob Knight

Using QIIME to analyze 16S rRNA gene sequences from microbial communities.

Justin Kuczynski
, Jesse Stombaugh
, William Anton Walters
, Antonio González
, J. Gregory Caporaso
, Rob Knight

Informatics, Computing, and Cyber Systems, School of

Research output: Contribution to journal › Article › peer-review

Abstract

QIIME (canonically pronounced "chime") is a software application that performs microbial community analysis. It is an acronym for Quantitative Insights Into Microbial Ecology, and has been used to analyze and interpret nucleic acid sequence data from fungal, viral, bacterial, and archaeal communities. The following protocols describe how to install QIIME on a single computer and use it to analyze microbial 16S sequence data from nine distinct microbial communities.

Original language	English (US)
Journal	Current Protocols in Bioinformatics
Volume	Chapter 10
State	Published - Dec 2011

ASJC Scopus subject areas

General Medicine

Cite this

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journal = "Current Protocols in Bioinformatics",

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AU - González, Antonio

AU - Caporaso, J. Gregory

AU - Knight, Rob

PY - 2011/12

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AB - QIIME (canonically pronounced "chime") is a software application that performs microbial community analysis. It is an acronym for Quantitative Insights Into Microbial Ecology, and has been used to analyze and interpret nucleic acid sequence data from fungal, viral, bacterial, and archaeal communities. The following protocols describe how to install QIIME on a single computer and use it to analyze microbial 16S sequence data from nine distinct microbial communities.

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SN - 1934-3396

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JO - Current Protocols in Bioinformatics

JF - Current Protocols in Bioinformatics

ER -

Using QIIME to analyze 16S rRNA gene sequences from microbial communities.

Abstract

ASJC Scopus subject areas

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