Unique Genomic Epidemiology of COVID-19 in the White Mountain Apache Tribe, April to August 2020, Arizona

Jolene R. Bowers, Hayley D. Yaglom, Crystal M. Hepp, Ashlyn Pfeiffer, Daniel Jasso-Selles, Nicole Bratsch, J. T. Nashio, Megan Folkerts, Sara M. Wilbur, Chris French, Darrin Lemmer, Kathryn Fitzpatrick, Trung Huynh, Kenneth Komatsu, James B. McAuley, Ryan Close, David M. Engelthaler

Research output: Contribution to journalArticlepeer-review


The first case of coronavirus disease 2019 (COVID-19) within the White Mountain Apache Tribe (WMAT) in Arizona was diagnosed almost 1 month after community transmission was recognized in the state. Aggressive contact tracing allowed for robust genomic epidemiology of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), and subsequent phylogenetic analyses implicated only two virus introductions, which resulted in the spread of two unique viral lineages on the reservation. The phylogenies of these lineages reflect the nature of the introductions, the remoteness of the community, and the extraordinarily high attack rates. The timing and space-limited nature of the outbreaks validate the public health tracing efforts involved, which were illustrated by multiple short transmission chains over a period of several weeks, eventually resulting in extinction of the lineages. Comprehensive sampling and successful infection control efforts are illustrated in both the effective population size analyses and the limited mortality outcomes. The rapid spread and high attack rates of the two lineages may be due to a combination of sociological determinants of the WMAT and a seemingly enhanced transmissibility. The SARS-CoV-2 genomic epidemiology of the WMAT demonstrates a unique local history of the pandemic and highlights the extraordinary and successful efforts of their public health response.

Original languageEnglish (US)
Issue number2
StatePublished - Apr 2023


  • COVID-19
  • Native American
  • contact tracing
  • genomic epidemiology
  • tribes

ASJC Scopus subject areas

  • Microbiology
  • Molecular Biology


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