Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin

Keyphrases

• QIIME 100%
• Amplicon Sequencing 100%
• Marker Genes 100%
• Taxonomic Classification 100%
• Feature Classifier 100%
• Gene Sequencing 60%
• BLAST+ 40%
• Naïve Bayes 40%
• VSEARCH 40%
• Tax Credits 40%
• Species Level 20%
• Microbiological Analysis 20%
• Sequence Data 20%
• Bacterial 16S rRNA Gene 20%
• Classification Performance 20%
• Mock Community 20%
• Error-free 20%
• Operating Conditions 20%
• Classification Methods 20%
• Benchmarking Framework 20%
• Parameter Selection 20%
• Fungal ITS 20%
• Machine Learning Techniques 20%
• Consensus Methods 20%
• Machine Learning Classifiers 20%
• Parameter Tuning 20%
• Novel Machine 20%
• Sequence Simulation 20%
• Free Sequence 20%
• Scikit-learn 20%
• Alignment-based Method 20%
• GitHub 20%

Biochemistry, Genetics and Molecular Biology

• Amplicon 100%
• Marker Gene 100%
• Gene Sequence 60%
• Bayesian Learning 40%
• 16S Ribosomal RNA 20%
• Microbiome 20%

Agricultural and Biological Sciences

• Amplicon 100%
• Microbiome 50%