Molecular population genetics of SLC4A1 and Southeast Asian Ovalocytosis

Jason A. Wilder, Jonathan A. Stone, Elizabeth G. Preston, Lauren E. Finn, Hannah L. Ratcliffe, Herawati Sudoyo

Research output: Contribution to journalArticlepeer-review

17 Scopus citations


Southeast Asian ovalocytosis (SAO) is an erythrocyte abnormality that protects affected individuals from cerebral malaria. This trait is caused by a 27-bp deletion in the SLC4A1 gene, which is lethal when homozygous. We reseqeunced approximately 5 kb of SLC4A1 in an Indonesian population where SAO is prevalent to better understand the evolution of this clinically important trait. The four SAO chromosomes we resequenced share a single haplotype that differs from a sampled non-SAO haplotype only by the 27-bp deletion. Comparison of Indonesian sequence data to that from two other Asian populations (aboriginal Taiwanese and Japanese) shows Indonesian SLC4A1 to be strongly differentiated from the Taiwanese, but not the Japanese. Indeed, the Taiwanese sample contains only chromosomes that are highly divergent from all sampled SAO chromosomes. Because earlier studies have found an association between Austronesian-speakers (who most likely originated in Taiwan) and SAO, our failure to find SAO-like chromosomes in Taiwan is unexpected. Finally, our data find a strong excess of high-frequency derived alleles in all three populations. These alleles include the non-synonymous 'Memphis' variant, which is known to affect anion transport across the erythrocyte membrane. Our data suggest a role for recent natural selection acting on Memphis or a linked variant.

Original languageEnglish (US)
Pages (from-to)182-187
Number of pages6
JournalJournal of Human Genetics
Issue number3
StatePublished - Mar 2009


  • Evolution
  • Memphis
  • Molecular population genetics
  • SLC4A1
  • Southeast Asian ovalocytosis

ASJC Scopus subject areas

  • Genetics
  • Genetics(clinical)


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