First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ

Emilie E.L. Muller; Shaman Narayanasamy; Myriam Zeimes; Cédric C. Laczny; Laura A. Lebrun; Malte Herold; Nathan D. Hicks; John D. Gillece; James M. Schupp; Paul Keim; Paul Wilmes

doi:10.1186/s40793-017-0274-y

First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ

Emilie E.L. Muller, Shaman Narayanasamy, Myriam Zeimes, Cédric C. Laczny, Laura A. Lebrun, Malte Herold, Nathan D. Hicks, John D. Gillece, James M. Schupp, Paul Keim, Paul Wilmes

Biological Sciences

Research output: Contribution to journal › Article › peer-review

11 Scopus citations

Abstract

The Gram-negative beta-proteobacterium Zoogloea sp. LCSB751 (LMG 29444) was newly isolated from foaming activated sludge of a municipal wastewater treatment plant. Here, we describe its draft genome sequence and annotation together with a general physiological and genomic analysis, as the first sequenced representative of the Zoogloea genus. Moreover, Zoogloea sp. gene expression in its environment is described using metatranscriptomic data obtained from the same treatment plant. The presented genomic and transcriptomic information demonstrate a pronounced capacity of this genus to synthesize poly-β-hydroxyalkanoate within wastewater.

Original language	English (US)
Article number	64
Journal	Standards in Genomic Sciences
Volume	12
Issue number	1
DOIs	https://doi.org/10.1186/s40793-017-0274-y
State	Published - Oct 18 2017

Keywords

Genome assembly
Genomic features
Lipid metabolism
Metatranscriptomics
Poly-hydroxyalkanoate
Wastewater treatement plant

ASJC Scopus subject areas

Genetics

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title = "First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ",

abstract = "The Gram-negative beta-proteobacterium Zoogloea sp. LCSB751 (LMG 29444) was newly isolated from foaming activated sludge of a municipal wastewater treatment plant. Here, we describe its draft genome sequence and annotation together with a general physiological and genomic analysis, as the first sequenced representative of the Zoogloea genus. Moreover, Zoogloea sp. gene expression in its environment is described using metatranscriptomic data obtained from the same treatment plant. The presented genomic and transcriptomic information demonstrate a pronounced capacity of this genus to synthesize poly-β-hydroxyalkanoate within wastewater.",

keywords = "Genome assembly, Genomic features, Lipid metabolism, Metatranscriptomics, Poly-hydroxyalkanoate, Wastewater treatement plant",

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doi = "10.1186/s40793-017-0274-y",

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T1 - First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ

AU - Muller, Emilie E.L.

AU - Narayanasamy, Shaman

AU - Zeimes, Myriam

AU - Laczny, Cédric C.

AU - Lebrun, Laura A.

AU - Herold, Malte

AU - Hicks, Nathan D.

AU - Gillece, John D.

AU - Schupp, James M.

AU - Keim, Paul

AU - Wilmes, Paul

PY - 2017/10/18

Y1 - 2017/10/18

N2 - The Gram-negative beta-proteobacterium Zoogloea sp. LCSB751 (LMG 29444) was newly isolated from foaming activated sludge of a municipal wastewater treatment plant. Here, we describe its draft genome sequence and annotation together with a general physiological and genomic analysis, as the first sequenced representative of the Zoogloea genus. Moreover, Zoogloea sp. gene expression in its environment is described using metatranscriptomic data obtained from the same treatment plant. The presented genomic and transcriptomic information demonstrate a pronounced capacity of this genus to synthesize poly-β-hydroxyalkanoate within wastewater.

AB - The Gram-negative beta-proteobacterium Zoogloea sp. LCSB751 (LMG 29444) was newly isolated from foaming activated sludge of a municipal wastewater treatment plant. Here, we describe its draft genome sequence and annotation together with a general physiological and genomic analysis, as the first sequenced representative of the Zoogloea genus. Moreover, Zoogloea sp. gene expression in its environment is described using metatranscriptomic data obtained from the same treatment plant. The presented genomic and transcriptomic information demonstrate a pronounced capacity of this genus to synthesize poly-β-hydroxyalkanoate within wastewater.

KW - Genome assembly

KW - Genomic features

KW - Lipid metabolism

KW - Metatranscriptomics

KW - Poly-hydroxyalkanoate

KW - Wastewater treatement plant

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First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ

Abstract

Keywords

ASJC Scopus subject areas

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