TY - JOUR
T1 - Assessing microbiome engraftment extent following fecal microbiota transplant with q2-fmt
AU - Herman, Chloe
AU - Bolyen, Evan
AU - Simard, Anthony
AU - Gehret, Liz
AU - Caporaso, J. Gregory
N1 - Publisher Copyright:
© 2025 Herman et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
PY - 2025/7
Y1 - 2025/7
N2 - We present q2-fmt, a QIIME 2 plugin that provides diverse methods for assessing the extent of microbiome engraftment following fecal microbiota transplant. The methods implemented here were informed by a recent literature review on approaches for assessing FMT engraftment, and cover aspects of engraftment including Community Coalescence, Indicator Features, and Resilience. q2-fmt is free for all use, and detailed documentation illustrating worked examples on a real-world data set are provided in the project’s documentation.
AB - We present q2-fmt, a QIIME 2 plugin that provides diverse methods for assessing the extent of microbiome engraftment following fecal microbiota transplant. The methods implemented here were informed by a recent literature review on approaches for assessing FMT engraftment, and cover aspects of engraftment including Community Coalescence, Indicator Features, and Resilience. q2-fmt is free for all use, and detailed documentation illustrating worked examples on a real-world data set are provided in the project’s documentation.
UR - https://www.scopus.com/pages/publications/105012119741
UR - https://www.scopus.com/inward/citedby.url?scp=105012119741&partnerID=8YFLogxK
U2 - 10.1371/journal.pcbi.1013299
DO - 10.1371/journal.pcbi.1013299
M3 - Article
C2 - 40743285
AN - SCOPUS:105012119741
SN - 1553-734X
VL - 21
JO - PLoS Computational Biology
JF - PLoS Computational Biology
IS - 7 July
M1 - e1013299
ER -