Research output per year
Research output per year
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Dive into the research topics where Viacheslav Fofanov is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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High-throughput targeted amplicon screening tool for characterizing intrahost diversity in Staphylococcus aureus directly from sample
Furstenau, T. N., Whealy, R., Timm, S., Roberts, A., Maltinsky, S., Wells, S. J., Drake, K., Ross, A., Bolduc, C., Pearson, T. & Fofanov, V. Y., Jun 1 2025, In: Microbial Genomics. 11, 6, 001427.Research output: Contribution to journal › Article › peer-review
Open Access -
Host population dynamics influence Leptospira spp. transmission patterns among Rattus norvegicus in Boston, Massachusetts, US
Stone, N. E., Hamond, C., Clegg, J. R., McDonough, R. F., Bourgeois, R. M., Ballard, R., Thornton, N. B., Nuttall, M., Hertzel, H., Anderson, T., Whealy, R. N., Timm, S., Roberts, A. K., Barragán, V., Phipatanakul, W., Leibler, J. H., Benson, H., Specht, A., White, R. & Lecount, K. & 12 others, , Apr 2025, In: PLoS neglected tropical diseases. 2025-April, e0012966.Research output: Contribution to journal › Article › peer-review
Open Access -
Longitudinal prevalence and co-carriage of pathogens associated with nursing home acquired pneumonia in three long-term care facilities
Whealy, R. N., Roberts, A., Furstenau, T. N., Timm, S., Maltinsky, S., Wells, S. J., Drake, K., Ramirez, K., Bolduc, C., Ross, A., Pearson, T. & Fofanov, V. Y., Aug 2025, In: PLOS Global Public Health. 5, 8, e0004954.Research output: Contribution to journal › Article › peer-review
Open Access -
Population sequencing for phylogenetic diversity and transmission analyses
Pearson, T., Furstenau, T., Wood, C., Rigas, V., Drake, K., Sahl, J., Maltinsky, S., Currie, B. J., Mayo, M., Hall, C., Keim, P. & Fofanov, V., Jun 10 2025, In: Proceedings of the National Academy of Sciences of the United States of America. 122, 23, e2424797122.Research output: Contribution to journal › Article › peer-review
Open Access -
ColiSeq: a multiplex amplicon assay that provides strain level resolution of Escherichia coli directly from clinical specimens
Williamson, C. H. D., Vazquez, A. J., Nunnally, A. E., Kyger, K., Fofanov, V. Y., Furstenau, T. N., Hornstra, H. M., Terriquez, J., Keim, P. & Sahl, J. W., Jun 2024, In: Microbiology spectrum. 12, 6Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations
Datasets
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Data from: Megafauna decline have reduced pathogen dispersal which may have increased emergent infectious diseases
Doughty, C. (Creator), Prys-Jones, T. (Creator), Faurby, S. (Creator), Hepp, C. (Creator), Fofanov, V. (Creator), Abraham, A. (Creator), Leshyk, V. (Creator), Nieto, N. (Creator) & Galetti, M. (Creator), DRYAD, Apr 17 2020
DOI: 10.5061/dryad.dfn2z34xk, https://datadryad.org/dataset/doi:10.5061/dryad.dfn2z34xk
Dataset
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Dietary metabarcoding datasets for the southern meadow jumping mouse (Zapus luteus luteus)
Sanchez, D. (Contributor), Fofanov, V. (Contributor), Lyman, J. (Contributor), Zahratka, J. (Contributor), Walker, F. (Contributor) & Chambers, C. (Contributor), Zenodo, Jun 9 2022
DOI: 10.5281/zenodo.6506730, https://zenodo.org/records/6506730
Dataset
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Data from: Megafauna decline have reduced pathogen dispersal which may have increased emergent infectious diseases
Doughty, C. (Contributor), Prys-Jones, T. (Contributor), Faurby, S. (Contributor), Hepp, C. (Contributor), Fofanov, V. (Contributor), Abraham, A. (Contributor), Leshyk, V. (Contributor), Nieto, N. (Contributor) & Galetti, M. (Contributor), Zenodo, Apr 17 2020
DOI: 10.5061/dryad.dfn2z34xk, https://zenodo.org/records/4997771
Dataset
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Dietary metabarcoding datasets for the southern meadow jumping mouse (Zapus luteus luteus)
Sanchez, D. (Contributor), Fofanov, V. (Contributor), Lyman, J. (Contributor), Zahratka, J. (Contributor), Walker, F. (Contributor) & Chambers, C. (Contributor), Zenodo, Jun 9 2022
DOI: 10.5061/dryad.j0zpc86h8, https://zenodo.org/records/6628397
Dataset
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Variant Site Strain Typer (VaST): Efficient strain typing using a minimal number of variant genomic sites
Furstenau, T. N. (Creator), Cocking, J. H. (Creator), Sahl, J. W. (Creator) & Fofanov, V. Y. (Creator), figshare, 2017
DOI: 10.6084/m9.figshare.5536744.v1, https://figshare.com/articles/dataset/Variant_Site_Strain_Typer_VaST_Efficient_strain_typing_using_a_minimal_number_of_variant_genomic_sites/5536744/1
Dataset