Paul Keim

E. Raymond and Ruth Reed Cowden Professor, Regents Professor; Microbiology; Executive Director, Pathogen and Microbiome Institute (PMI)

E. Raymond and Ruth Reed Cowden Professor, Regents Professor; Microbiology; Executive Director, Pathogen and Microbiome Institute (PMI), Biological Sciences
E. Raymond and Ruth Reed Cowden Professor, Regents Professor; Microbiology; Executive Director, Pathogen and Microbiome Institute (PMI), Pathogen & Microbiome Institute (PMI)

Former affiliation

Biological Sciences

Emailpaul.keimnauedu

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Research activity per year

414 Article
26 Chapter
17 Review article
16 Comment/debate
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16 results

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2019
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (Nature Biotechnology, (2019), 37, 8, (852-857), 10.1038/s41587-019-0209-9)
Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., Bai, Y., Bisanz, J. E., Bittinger, K., Brejnrod, A., Brislawn, C. J., Brown, C. T., Callahan, B. J., Caraballo-Rodríguez, A. M., Chase, J. & Cope, E. K. & 92 others, Da Silva, R., Diener, C., Dorrestein, P. C., Douglas, G. M., Durall, D. M., Duvallet, C., Edwardson, C. F., Ernst, M., Estaki, M., Fouquier, J., Gauglitz, J. M., Gibbons, S. M., Gibson, D. L., Gonzalez, A., Gorlick, K., Guo, J., Hillmann, B., Holmes, S., Holste, H., Huttenhower, C., Huttley, G. A., Janssen, S., Jarmusch, A. K., Jiang, L., Kaehler, B. D., Kang, K. B., Keefe, C. R., Keim, P., Kelley, S. T., Knights, D., Koester, I., Kosciolek, T., Kreps, J., Langille, M. G. I., Lee, J., Ley, R., Liu, Y. X., Loftfield, E., Lozupone, C., Maher, M., Marotz, C., Martin, B. D., McDonald, D., McIver, L. J., Melnik, A. V., Metcalf, J. L., Morgan, S. C., Morton, J. T., Naimey, A. T., Navas-Molina, J. A., Nothias, L. F., Orchanian, S. B., Pearson, T., Peoples, S. L., Petras, D., Preuss, M. L., Pruesse, E., Rasmussen, L. B., Rivers, A., Robeson, M. S., Rosenthal, P., Segata, N., Shaffer, M., Shiffer, A., Sinha, R., Song, S. J., Spear, J. R., Swafford, A. D., Thompson, L. R., Torres, P. J., Trinh, P., Tripathi, A., Turnbaugh, P. J., Ul-Hasan, S., van der Hooft, J. J. J., Vargas, F., Vázquez-Baeza, Y., Vogtmann, E., von Hippel, M., Walters, W., Wan, Y., Wang, M., Warren, J., Weber, K. C., Williamson, C. H. D., Willis, A. D., Xu, Z. Z., Zaneveld, J. R., Zhang, Y., Zhu, Q., Knight, R. & Caporaso, J. G., Sep 1 2019, In: Nature Biotechnology. 37, 9, p. 1091 1 p.
Research output: Contribution to journal › Comment/debate › peer-review

Open Access
380 Scopus citations
2016

A novel botulinum neurotoxin and how it tested our scientific institutions
Keim, P., Feb 1 2016, In: Journal of Infectious Diseases. 213, 3, p. 332-334 3 p.
Research output: Contribution to journal › Comment/debate › peer-review

Open Access

3 Scopus citations
Correction: Johnson et al., Complete genome sequences for 59 burkholderia isolates, both pathogenic and near neighbor [Genome Announcements, 3, 2, e00159-15, (2015)]doi 10.1128/genomeA.00159-15
Johnson, S. L., Bishop-Lilly, K. A., Ladner, J. T., Daligault, H. E., Davenport, K. W., Jaissle, J., Frey, K. G., Koroleva, G. I., Bruce, D. C., Coyne, S. R., Broomall, S. M., Ketheesan, N., Mayo, M., Hoffmaster, A., Elrod, M. G., Wuthiekanun, V., Tuanyok, A., Norton, R., Currie, B. J. & Wagner, D. M. & 10 others, Keim, P., Li, P. E., Teshima, H., Gibbons, H. S., Palacios, G. F., Nicole Rosenzweig, C., Redden, C. L., Xu, Y., Minogue, T. D. & Chain, P. S., 2016, In: Genome Announcements. 4, 2, e00313-16.
Research output: Contribution to journal › Comment/debate › peer-review

Open Access
2 Scopus citations
2012
Genome sequence of "Candidatus Microthrix parvicella" Bio17-1, a long-chain-fatty-acid-accumulating filamentous actinobacterium from a biological wastewater treatment plant
Muller, E. E. L., Pinel, N., Gillece, J. D., Schupp, J. M., Price, L. B., Engelthaler, D. M., Levantesi, C., Tandoi, V., Luong, K., Baliga, N. S., Korlach, J., Keim, P. S. & Wilmes, P., Dec 2012, In: Journal of Bacteriology. 194, 23, p. 6670-6671 2 p.
Research output: Contribution to journal › Comment/debate › peer-review

Open Access
28 Scopus citations
Policy: Adaptations of avian flu virus are a cause for concern
Berns, K. I., Casadevall, A., Cohen, M. L., Ehrlich, S. A., Enquist, L. W., Fitch, J. P., Franz, D. R., Fraser-Liggett, C. M., Grant, C. M., Imperiale, M. J., Kanabrocki, J., Keim, P. S., Lemon, S. M., Levy, S. B., Lumpkin, J. R., Miller, J. F., Murch, R., Nance, M. E., Osterholm, M. T. & Relman, D. A. & 2 others, Roth, J. A. & Vidaver, A. K., Feb 9 2012, In: Nature. 482, 7384, p. 153-154 2 p.
Research output: Contribution to journal › Comment/debate › peer-review

28 Scopus citations
Q&A: Reasons for proposed redaction of flu paper
Keim, P. S., Feb 9 2012, In: Nature. 482, 7384, p. 156-157 2 p.
Research output: Contribution to journal › Comment/debate › peer-review

3 Scopus citations
The NSABB Recommendations: Rationale, Impact, and Implications
Keim, P. S., 2012, In: mBio. 3, 1, p. 1-2 2 p., e00021-12.
Research output: Contribution to journal › Comment/debate › peer-review
16 Scopus citations
2009
Phylogenetic understanding of clonal populations in an era of whole genome sequencing
Pearson, T., Okinaka, R. T., Foster, J. T. & Keim, P., Sep 2009, In: Infection, Genetics and Evolution. 9, 5, p. 1010-1019 10 p.
Research output: Contribution to journal › Comment/debate › peer-review
102 Scopus citations
Use of forensic methods under exigent circumstances without full validation
Schutzer, S. E., Keim, P., Czerwinski, K. & Budowle, B., Nov 25 2009, In: Science Translational Medicine. 1, 8, 8cm7.
Research output: Contribution to journal › Comment/debate › peer-review
19 Scopus citations
2008

Real-time PCR assays of single-nucleotide polymorphisms defining the major Brucella clades (Journal of Clinical Microbiology (2008) 46, 1, (296-301))
Foster, J. T., Okinaka, R. T., Svensson, R., Shaw, K., De Barun, K., Robison, R. A., Probert, W. S., Kenefic, L. J., Brown, W. D. & Keim, P., Jul 2008, In: Journal of Clinical Microbiology. 46, 7, p. 2474 1 p.
Research output: Contribution to journal › Comment/debate › peer-review

Open Access
2006

Anthrax, but not Bacillus anthracis?
Okinaka, R., Pearson, T. & Keim, P., Nov 2006, In: PLoS Pathogens. 2, 11, p. 1025-1027 3 p.
Research output: Contribution to journal › Comment/debate › peer-review

34 Scopus citations
Erratum: Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis (Journal of Bacteriology (2006) 188, 9 (3382-3390))
Han, C. S., Xie, G., Challacombe, J. F., Altherr, M. R., Bhotika, S. S., Brown, N., Bruce, D., Campbell, C. S., Campbell, M. L., Chen, J., Chertkov, O., Cleland, C., Dimitrijevic, M., Doggett, N. A., Fawcett, J. J., Glavina, T., Goodwin, L. A., Green, L. D., Hill, K. K. & Hitchcock, P. & 28 others, Jackson, P. J., Keim, P., Kewalramani, A. R., Longmire, J., Lucas, S., Malfatti, S., McMurry, K., Meincke, L. J., Misra, M., Moseman, B. L., Mundt, M., Munk, A. C., Okinaka, R. T., Parson-Quintana, B., Reilly, L. P., Richardson, P., Robinson, D. L., Rubin, E., Saunders, E., Tapia, R., Tesmer, J. G., Thayer, N., Thompson, L. S., Tice, H., Ticknor, L. O., Wills, P. L., Brettin, T. S. & Gilna, P., Nov 2006, In: Journal of Bacteriology. 188, 21, p. 7711 1 p.
Research output: Contribution to journal › Comment/debate › peer-review

Open Access
2005

Erratum: Identifying sources of human exposure to plague (Journal of Clinical Microbiology (2005) 43:2 (650-656))
Lowell, J. L., Wagner, D. M., Atshabar, B., Antolin, M. F., Vogler, A. J., Keim, P., Chu, M. C. & Gage, K. L., Apr 2005, In: Journal of Clinical Microbiology. 43, 4, p. 2040 1 p.
Research output: Contribution to journal › Comment/debate › peer-review

Open Access
2000

Erratum: Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis (Journal of Bacteriology (2000) 182:10 (2928-2936))
Keim, P., Price, L. B., Klevytska, A. M., Smith, K. L., Schupp, J. M., Okinaka, R., Jackson, P. J. & Hugh-Jones, M. E., 2000, In: Journal of Bacteriology. 182, 23, p. 6862 1 p.
Research output: Contribution to journal › Comment/debate › peer-review

Open Access

4 Scopus citations
1999

Erratum: Internal and flanking sequence from AFLP fragments using ligation-mediated suppression PCR (BioTechniques (May 1999) 26 (905-912))
Schupp, J. M., Price, L. B., Klevytska, A. & Keim, P., 1999, In: BioTechniques. 27, 2, p. 340 1 p.
Research output: Contribution to journal › Comment/debate › peer-review
Re-analysis of genetic structure among populations of Rana pipiens in Arizona and Utah
Miller, M. P., Kimberling, D. N. & Keim, P., Dec 1999, In: Southwestern Naturalist. 44, 4, p. 527-530 4 p.
Research output: Contribution to journal › Comment/debate › peer-review

Paul Keim

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