Paul Keim

Search results

• A global to local genomics analysis of Clostridioides difficile ST1/RT027 identifies cryptic transmission events in a northern Arizona healthcare network

  Williamson, C. H. D. (Creator), Stone, N. E. (Creator), Nunnally, A. E. (Contributor), Hornstra, H. M. (Creator), Wagner, D. M. (Creator), Roe, C. C. (Creator), Vazquez, A. J. (Creator), Nandurkar, N. (Contributor), Vinocur, J. (Creator), Terriquez, J. (Creator), Gillece, J. (Creator), Travis, J. (Creator), Lemmer, D. (Creator), Keim, P. (Creator) & Sahl, J. W. (Creator), figshare, 2019

  DOI: 10.6084/m9.figshare.7966775, https://microbiology.figshare.com/articles/A_global_to_local_genomics_analysis_of_Clostridioides_difficile_ST1_RT027_identifies_cryptic_transmission_events_in_a_northern_Arizona_healthcare_network/7966775

  Dataset

• MOESM2 of Meta-analysis to estimate the load of Leptospira excreted in urine: beyond rats as important sources of transmission in low-income rural communities

  Pearson, T. (Contributor), Nieto, N. (Contributor), Barragan, V. (Contributor) & Keim, P. (Contributor), figshare Academic Research System, Jan 28 2017

  DOI: 10.6084/m9.figshare.c.3676603_d2.v1, https://doi.org/10.6084%2Fm9.figshare.c.3676603_d2.v1

  Dataset

• Additional file 4: Figure S1. of Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

  Korkeala, H. (Contributor), Xie, G. (Contributor), Hill, K. (Contributor), Williamson, C. H. D. (Contributor), Smith, T. J. (Contributor), Fernández, R. A. (Contributor), Lindström, M. (Contributor), Keim, P. (Contributor), Foley, B. T. (Contributor), Smith, L. A. (Contributor), Sahl, J. W. (Contributor) & Foster, J. (Contributor), figshare Academic Research System, Jan 1 2016

  DOI: 10.6084/m9.figshare.c.3630344_d8.v1, https://doi.org/10.6084%2Fm9.figshare.c.3630344_d8.v1

  Dataset

• Additional file 7: Figure S4. of Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

  Lindström, M. (Contributor), Korkeala, H. (Contributor), Fernández, R. A. (Contributor), Williamson, C. H. D. (Contributor), Hill, K. (Contributor), Foster, J. (Contributor), Foley, B. T. (Contributor), Keim, P. (Contributor), Xie, G. (Contributor), Smith, L. A. (Contributor), Sahl, J. W. (Contributor) & Smith, T. J. (Contributor), figshare Academic Research System, Jan 1 2016

  DOI: 10.6084/m9.figshare.c.3630344_d7.v1, https://doi.org/10.6084%2Fm9.figshare.c.3630344_d7.v1

  Dataset

• Additional file 2 of Leptospira in river and soil in a highly endemic area of Ecuador

  Caporaso, J. G. (Contributor), Pearson, T. (Contributor), Jiménez, D. J. (Contributor), Trueba, G. (Contributor), Chiriboga, J. (Contributor), Izurieta, R. (Contributor), Barragan, V. (Contributor), Weddell, C. (Contributor), Aleman, J. (Contributor), Luna, L. (Contributor), Nieto, N. (Contributor), Olivas, S. (Contributor), Marks, J. (Contributor), Miller, E. (Contributor), Keim, P. (Contributor) & Mihaljevic, J. R. (Contributor), figshare Academic Research System, Jan 1 2021

  DOI: 10.6084/m9.figshare.13543915.v1, https://doi.org/10.6084%2Fm9.figshare.13543915.v1

  Dataset

• MOESM4 of Meta-analysis to estimate the load of Leptospira excreted in urine: beyond rats as important sources of transmission in low-income rural communities

  Barragan, V. (Contributor), Nieto, N. (Contributor), Keim, P. (Contributor) & Pearson, T. (Contributor), figshare Academic Research System, Jan 28 2017

  DOI: 10.6084/m9.figshare.c.3676603_d4.v1, https://doi.org/10.6084%2Fm9.figshare.c.3676603_d4.v1

  Dataset

• Data from: Large effect quantitative trait loci for salicinoid phenolic glycosides in Populus: implications for gene discovery

  Woolbright, S. A. (Creator), Rehill, B. J. (Creator), Lindroth, R. L. (Creator), DiFazio, S. P. (Creator), Martinsen, G. D. (Creator), Zinkgraf, M. S. (Creator), Allan, G. J. (Creator), Keim, P. (Creator) & Whitham, T. G. (Creator), DRYAD, Jan 25 2019

  DOI: 10.5061/dryad.8h67t, https://datadryad.org/stash/dataset/doi:10.5061/dryad.8h67t

  Dataset

• Meta-analysis to estimate the load of Leptospira excreted in urine: beyond rats as important sources of transmission in low-income rural communities

  Barragan, V. (Creator), Nieto, N. (Creator), Keim, P. (Creator) & Pearson, T. (Contributor), figshare Academic Research System, 2017

  DOI: 10.6084/m9.figshare.c.3676603.v1, https://figshare.com/collections/Meta-analysis_to_estimate_the_load_of_Leptospira_excreted_in_urine_beyond_rats_as_important_sources_of_transmission_in_low-income_rural_communities/3676603/1

  Dataset

• Leptospira in river and soil in a highly endemic area of Ecuador

  Miller, E. (Creator), Barragan, V. (Creator), Chiriboga, J. (Creator), Weddell, C. (Creator), Luna, L. (Creator), Jiménez, D. J. (Creator), Aleman, J. (Creator), Mihaljevic, J. R. (Creator), Olivas, S. (Contributor), Marks, J. (Creator), Izurieta, R. (Creator), Nieto, N. (Creator), Keim, P. (Creator), Trueba, G. (Creator), Caporaso, J. G. (Contributor) & Pearson, T. (Contributor), figshare Academic Research System, 2021

  DOI: 10.6084/m9.figshare.c.5261254.v1, https://springernature.figshare.com/collections/Leptospira_in_river_and_soil_in_a_highly_endemic_area_of_Ecuador/5261254/1

  Dataset

• Data from: Large effect quantitative trait loci for salicinoid phenolic glycosides in Populus: implications for gene discovery

  Woolbright, S. A. (Contributor), Rehill, B. J. (Contributor), Lindroth, R. L. (Contributor), DiFazio, S. P. (Contributor), Martinsen, G. D. (Contributor), Zinkgraf, M. S. (Contributor), Allan, G. J. (Contributor), Keim, P. (Contributor) & Whitham, T. G. (Contributor), Zenodo, Jan 25 2019

  DOI: 10.5061/dryad.8h67t, https://zenodo.org/records/4962391

  Dataset

• Supplement 1. Macroinvertebrate community matrix data.

  LeRoy, C. J. (Creator), Whitham, T. G. (Creator), Keim, P. (Creator) & Marks, J. C. (Creator), figshare Academic Research System, 2016

  DOI: 10.6084/m9.figshare.3525674.v1, https://wiley.figshare.com/articles/dataset/Supplement_1_Macroinvertebrate_community_matrix_data_/3525674/1

  Dataset

• Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

  Williamson, C. H. D. (Creator), Sahl, J. W. (Creator), Smith, T. J. (Creator), Xie, G. (Creator), Foley, B. T. (Creator), Smith, L. A. (Creator), Fernández, R. A. (Contributor), Lindström, M. (Contributor), Korkeala, H. (Creator), Keim, P. (Creator), Foster, J. (Creator) & Hill, K. (Creator), figshare Academic Research System, 2016

  DOI: 10.6084/m9.figshare.c.3630344.v1, https://figshare.com/collections/Comparative_genomic_analyses_reveal_broad_diversity_in_botulinum-toxin-producing_Clostridia/3630344/1

  Dataset

• Additional file 1: Table S1. of Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

  Williamson, C. H. D. (Creator), Sahl, J. W. (Creator), Smith, T. J. (Creator), Xie, G. (Creator), Foley, B. T. (Creator), Smith, L. A. (Creator), Fernández, R. A. (Contributor), Lindström, M. (Contributor), Korkeala, H. (Creator), Keim, P. (Creator), Foster, J. (Creator) & Hill, K. (Creator), figshare Academic Research System, 2016

  DOI: 10.6084/m9.figshare.c.3630344_d9.v1, https://springernature.figshare.com/articles/dataset/Additional_file_1_Table_S1_of_Comparative_genomic_analyses_reveal_broad_diversity_in_botulinum-toxin-producing_Clostridia/4421987/1

  Dataset

• Additional file 2: Table S2. of Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

  Williamson, C. H. D. (Creator), Sahl, J. W. (Creator), Smith, T. J. (Creator), Xie, G. (Creator), Foley, B. T. (Creator), Smith, L. A. (Creator), Fernández, R. A. (Contributor), Lindström, M. (Contributor), Korkeala, H. (Creator), Keim, P. (Creator), Foster, J. (Creator) & Hill, K. (Creator), figshare, 2016

  DOI: 10.6084/m9.figshare.c.3630344_d6, https://springernature.figshare.com/articles/dataset/Additional_file_2_Table_S2_of_Comparative_genomic_analyses_reveal_broad_diversity_in_botulinum-toxin-producing_Clostridia/4421948

  Dataset

• Data from: When outgroups fail; phylogenomics of rooting the emerging pathogen, Coxiella burnetii

  Pearson, T. (Creator), Hornstra, H. M. (Creator), Sahl, J. W. (Creator), Schaack, S. (Creator), Schupp, J. M. (Creator), Beckstrom-Sternberg, S. M. (Creator), O'Neill, M. W. (Creator), Priestley, R. A. (Creator), Champion, M. D. (Creator), Beckstrom-Sternberg, J. S. (Creator), Kersh, G. J. (Creator), Samuel, J. E. (Creator), Massung, R. F. (Creator) & Keim, P. (Creator), DRYAD, May 31 2013

  DOI: 10.5061/dryad.3g615, https://datadryad.org/stash/dataset/doi:10.5061/dryad.3g615

  Dataset

• Data from: Genotyping of Coxiella burnetii from domestic ruminants and human in Hungary: indication of various genotypes

  Sulyok, K. M. (Creator), Kreizinger, Z. (Creator), Gyuranecz, M. (Creator), Hornstra, H. M. (Creator), Pearson, T. (Creator), Szigeti, A. (Creator), Dán, Á. (Creator), Balla, E. (Creator) & Keim, P. S. (Creator), DRYAD, Apr 7 2015

  DOI: 10.5061/dryad.rc8q4, https://datadryad.org/stash/dataset/doi:10.5061/dryad.rc8q4

  Dataset

• A global to local genomics analysis of Clostridioides difficile ST1/RT027 identifies cryptic transmission events in a northern Arizona healthcare network

  Williamson, C. H. D. (Creator), Stone, N. E. (Creator), Nunnally, A. E. (Contributor), Hornstra, H. M. (Creator), Wagner, D. M. (Creator), Roe, C. C. (Creator), Vazquez, A. J. (Creator), Nandurkar, N. (Contributor), Vinocur, J. (Creator), Terriquez, J. (Creator), Gillece, J. (Creator), Travis, J. (Creator), Lemmer, D. (Creator), Keim, P. (Creator) & Sahl, J. W. (Creator), figshare Academic Research System, 2019

  DOI: 10.6084/m9.figshare.7966775.v1, https://microbiology.figshare.com/articles/A_global_to_local_genomics_analysis_of_Clostridioides_difficile_ST1_RT027_identifies_cryptic_transmission_events_in_a_northern_Arizona_healthcare_network/7966775/1

  Dataset

• Additional file 6: Figure S3. of Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

  Smith, L. A. (Contributor), Korkeala, H. (Contributor), Xie, G. (Contributor), Foster, J. (Contributor), Sahl, J. W. (Contributor), Foley, B. T. (Contributor), Fernández, R. A. (Contributor), Keim, P. (Contributor), Smith, T. J. (Contributor), Hill, K. (Contributor), Lindström, M. (Contributor) & Williamson, C. H. D. (Contributor), figshare Academic Research System, Jan 1 2016

  DOI: 10.6084/m9.figshare.c.3630344_d2.v1, https://doi.org/10.6084%2Fm9.figshare.c.3630344_d2.v1

  Dataset

• Additional file 5: Figure S2. of Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

  Fernández, R. A. (Contributor), Williamson, C. H. D. (Contributor), Lindström, M. (Contributor), Smith, T. J. (Contributor), Foster, J. (Contributor), Foley, B. T. (Contributor), Smith, L. A. (Contributor), Korkeala, H. (Contributor), Keim, P. (Contributor), Xie, G. (Contributor), Hill, K. (Contributor) & Sahl, J. W. (Contributor), figshare Academic Research System, Jan 1 2016

  DOI: 10.6084/m9.figshare.c.3630344_d4.v1, https://doi.org/10.6084%2Fm9.figshare.c.3630344_d4.v1

  Dataset

• Data from: When outgroups fail; phylogenomics of rooting the emerging pathogen, Coxiella burnetii

  Pearson, T. (Contributor), Hornstra, H. M. (Contributor), Sahl, J. W. (Contributor), Schaack, S. (Contributor), Schupp, J. M. (Contributor), Beckstrom-Sternberg, S. M. (Contributor), O'Neill, M. W. (Contributor), Priestley, R. A. (Contributor), Champion, M. D. (Contributor), Beckstrom-Sternberg, J. S. (Contributor), Kersh, G. J. (Contributor), Samuel, J. E. (Contributor), Massung, R. F. (Contributor) & Keim, P. (Contributor), Zenodo, May 31 2013

  DOI: 10.5061/dryad.3g615, https://zenodo.org/records/5001122

  Dataset

• Additional file 1: of Coinfections identified from metagenomic analysis of cervical lymph nodes from tularemia patients

  Birdsell, D. N. (Contributor), Keim, P. S. (Contributor), Mitchell, C. L. (Contributor), Özsürekci, Y. (Contributor), Johansson, A. (Contributor), Colman, R. E. (Contributor), Aycan, A. E. (Contributor), Ceyhan, M. (Contributor), Schupp, J. M. (Contributor), Wagner, D. M. (Contributor), Rawat, A. (Contributor) & Sahl, J. W. (Contributor), figshare Academic Research System, Jul 11 2018

  DOI: 10.6084/m9.figshare.6807674.v1, https://doi.org/10.6084%2Fm9.figshare.6807674.v1

  Dataset

• Additional file 9: Figure S6. of Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

  Foley, B. T. (Contributor), Williamson, C. H. D. (Contributor), Foster, J. (Contributor), Lindström, M. (Contributor), Hill, K. (Contributor), Korkeala, H. (Contributor), Sahl, J. W. (Contributor), Keim, P. (Contributor), Smith, L. A. (Contributor), Smith, T. J. (Contributor), Xie, G. (Contributor) & Fernández, R. A. (Contributor), figshare Academic Research System, Jan 1 2016

  DOI: 10.6084/m9.figshare.c.3630344_d3.v1, https://doi.org/10.6084%2Fm9.figshare.c.3630344_d3.v1

  Dataset

• MOESM3 of Meta-analysis to estimate the load of Leptospira excreted in urine: beyond rats as important sources of transmission in low-income rural communities

  Nieto, N. (Contributor), Barragan, V. (Contributor), Keim, P. (Contributor) & Pearson, T. (Contributor), figshare Academic Research System, Jan 28 2017

  DOI: 10.6084/m9.figshare.c.3676603_d1.v1, https://doi.org/10.6084%2Fm9.figshare.c.3676603_d1.v1

  Dataset

• Data from: Genotyping of Coxiella burnetii from domestic ruminants and human in Hungary: indication of various genotypes

  Sulyok, K. M. (Contributor), Kreizinger, Z. (Contributor), Hornstra, H. M. (Contributor), Pearson, T. (Contributor), Szigeti, A. (Contributor), Dán, Á. (Contributor), Balla, E. (Contributor), Keim, P. S. (Contributor) & Gyuranecz, M. (Contributor), Zenodo, Apr 7 2015

  DOI: 10.5061/dryad.rc8q4, https://zenodo.org/records/5016417

  Dataset

• Multi-faceted metagenomic analysis of spacecraft associated surfaces reveal planetary protection relevant microbial composition

  Highlander, S. K. (Contributor), Wood, J. M. (Contributor), Gillece, J. D. (Contributor), Fofanov, V. Y. (Contributor), Furstenau, T. N. (Contributor), Singh, N. K. (Contributor), Guan, L. (Contributor), Benardini, J. N. (Contributor), Engelthaler, D. M. (Contributor), Venkateswaran, K. (Contributor) & Keim, P. S. (Contributor), Zenodo, Sep 1 2022

  DOI: 10.5281/zenodo.7041654, https://zenodo.org/records/7041654

  Dataset