Informatics, Computing, and Cyber Systems, School of

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• readme.Vulcan.1km.V3.0.ACES.6.9.2020.pdf

  Gurney, K. (Creator), Patarasuk, R. (Creator) & Roest, G. (Creator), Harvard Dataverse, 2020

  DOI: 10.7910/dvn/u6prvt/lg4olu, https://dataverse.harvard.edu/file.xhtml?persistentId=doi:10.7910/DVN/U6PRVT/LG4OLU

  Dataset

• total.AK.2011.hourly.UTC.4.tar

  Gurney, K. (Creator), Patarasuk, R. (Creator) & Roest, G. (Creator), Harvard Dataverse, 2020

  DOI: 10.7910/dvn/nedap3/apjlws, https://dataverse.harvard.edu/file.xhtml?persistentId=doi:10.7910/DVN/NEDAP3/APJLWS

  Dataset

• commercial.mn.2011.nc

  Gurney, K. (Creator), Patarasuk, R. (Creator) & Roest, G. (Creator), Harvard Dataverse, 2020

  DOI: 10.7910/dvn/u6prvt/r7ug7x, https://dataverse.harvard.edu/file.xhtml?persistentId=doi:10.7910/DVN/U6PRVT/R7UG7X

  Dataset

• total.lo.2011.nc

  Gurney, K. (Creator), Patarasuk, R. (Creator) & Roest, G. (Creator), Harvard Dataverse, 2020

  DOI: 10.7910/dvn/u6prvt/bbl6fl, https://dataverse.harvard.edu/file.xhtml?persistentId=doi:10.7910/DVN/U6PRVT/BBL6FL

  Dataset

• total.hi.2011.nc

  Gurney, K. (Creator), Patarasuk, R. (Creator) & Roest, G. (Creator), Harvard Dataverse, 2020

  DOI: 10.7910/dvn/u6prvt/lftuhs, https://dataverse.harvard.edu/file.xhtml?persistentId=doi:10.7910/DVN/U6PRVT/LFTUHS

  Dataset

• Multi-faceted metagenomic analysis of spacecraft associated surfaces reveal planetary protection relevant microbial composition

  Highlander, S. K. (Contributor), Wood, J. M. (Contributor), Gillece, J. D. (Contributor), Fofanov, V. Y. (Contributor), Furstenau, T. N. (Contributor), Singh, N. K. (Contributor), Guan, L. (Contributor), Benardini, J. N. (Contributor), Engelthaler, D. M. (Contributor), Venkateswaran, K. (Contributor) & Keim, P. S. (Contributor), Zenodo, Sep 1 2022

  DOI: 10.5281/zenodo.7041654, https://zenodo.org/records/7041654

  Dataset

• Can ChatGPT emulate humans in software engineering surveys? - ESEM '24

  Steinmacher, I. F. (Contributor), Romero Felizardo, K. R. (Contributor), Anonymous, A. (Contributor), McAuley, J. (Contributor) & Gerosa, M. A. (Contributor), Zenodo, Oct 1 2024

  DOI: 10.5281/zenodo.13975333, https://zenodo.org/records/13975333

  Dataset

• ABoVE: Wildfire Carbon Emissions and Burned Plot Characteristics, NWT, CA, 2014-2016

  Walker, X. J. (Contributor), Baltzer, J. L. (Contributor), Day, N. J. (Contributor), Goetz, S. (Contributor), Johnstone, J. F. (Contributor), Rogers, B. M. (Contributor), Turetsky, M. R. (Contributor) & Mack, M. C. (Contributor), Oak Ridge National Laboratory Distributed Active Archive Center, 2018

  DOI: 10.3334/ornldaac/1561, https://daac.ornl.gov/cgi-bin/dsviewer.pl?ds_id=1561

  Dataset

• ABoVE: Characterization of Carbon Dynamics in Burned Forest Plots, NWT, Canada, 2014

  Walker, X. J. (Contributor), Baltzer, J. L. (Contributor), Cumming, S. G. (Contributor), Day, N. J. (Contributor), Goetz, S. (Contributor), Johnstone, J. F. (Contributor), Potter, S. (Contributor), Rogers, B. M. (Contributor), Schuur, E. A. G. (Contributor), Turetsky, M. R. (Contributor) & Mack, M. C. (Contributor), Oak Ridge National Laboratory Distributed Active Archive Center, 2019

  DOI: 10.3334/ornldaac/1664, https://daac.ornl.gov/cgi-bin/dsviewer.pl?ds_id=1664

  Dataset

• ABoVE: Characterization of Carbon Dynamics in Burned Forest Plots, NWT, Canada, 2014

  Walker, X. J. (Contributor), Baltzer, J. L. (Contributor), Cumming, S. G. (Contributor), Day, N. J. (Contributor), Goetz, S. (Contributor), Johnstone, J. F. (Contributor), Potter, S. (Contributor), Rogers, B. M. (Contributor), Schuur, E. A. G. (Contributor), Turetsky, M. R. (Contributor), Mack, M. C. (Contributor) & LAURIER, W. (Creator), ORNL Distributed Active Archive Center, 2019

  DOI: 10.3334/ornldaac/1664, https://daac.ornl.gov/cgi-bin/dsviewer.pl?ds_id=1664

  Dataset

• Ensemble model output of North American atmospheric CO2 simulation (full WRF-chem output)

  Lauvaux, T. (Creator), Davis, K. J. (Creator), Keller, K. (Creator), Oda, T. (Creator), Gurney, K. (Creator), Williams, C. (Creator), Schuh, A. E. (Creator), Liu, J. (Creator) & Baker, I. (Creator), Data Commons, 2018

  DOI: 10.26208/7a4p-q224, http://www.datacommons.psu.edu/commonswizard/MetadataDisplay.aspx?Dataset=6229

  Dataset

• Hestia Fossil Fuel Carbon Dioxide (FFCO2) Data Product -- NE corridor domain, Version 1.0 Beta, 0.01 degree grid

  Gurney, K. (Creator) & Roest, G. (Creator), National Institute of Standards and Technology, 2023

  DOI: 10.18434/mds2-2930, https://data.nist.gov/od/id/mds2-2930

  Dataset

• PhenoCam Dataset v1.0: Vegetation Phenology from Digital Camera Imagery, 2000-2015

  Richardson, A. D. (Contributor), Hufkens, K. (Contributor), Milliman, T. (Contributor), Aubrecht, D. M. (Contributor), Chen, M. (Contributor), Gray, J. M. (Contributor), Johnston, M. R. (Contributor), Keenan, T. F. (Contributor), Klosterman, S. T. (Contributor), Kosmala, M. (Contributor), Melaas, E. K. (Contributor), Friedl, M. A. (Contributor) & Frolking, S. (Contributor), Oak Ridge National Laboratory Distributed Active Archive Center, 2017

  DOI: 10.3334/ornldaac/1511, https://daac.ornl.gov/cgi-bin/dsviewer.pl?ds_id=1511

  Dataset

• Data from: Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

  Fierer, N. (Contributor), Leff, J. W. (Contributor), Adams, B. J. (Contributor), Nielsen, U. N. (Contributor), Bates, S. T. (Contributor), Lauber, C. L. (Contributor), Owens, S. (Contributor), Gilbert, J. A. (Contributor), Wall, D. H. (Contributor) & Caporaso, J. G. (Contributor), Zenodo, May 7 2013

  DOI: 10.5061/dryad.q2n78, https://zenodo.org/records/4954226

  Dataset

• FLUXNET-CH4: A global, multi-ecosystem dataset and analysis of methane seasonality from freshwater wetlands (Appendix B and Figure 3)

  Delwiche, K. B. (Contributor), Knox, S. H. (Contributor), Malhotra, A. (Contributor), Fluet-Chouinard, E. (Contributor), McNicol, G. (Contributor), Feron, S. (Contributor), Ouyang, Z. (Contributor), Papale, D. (Contributor), Trotta, C. (Contributor), Canfora, E. (Contributor), Cheah, Y.-W. (Contributor), Christianson, D. (Contributor), Alberto, M. C. R. (Contributor), Alekseychik, P. (Contributor), Aurela, M. (Contributor), Baldocchi, D. (Contributor), Bansal, S. (Contributor), Billesbach, D. P. (Contributor), Bohrer, G. (Contributor), Bracho, R. (Contributor), Buchmann, N. (Contributor), Campbell, D. I. (Contributor), Celis, G. (Contributor), Chen, J. (Contributor), Chen, W. (Contributor), Chu, H. (Contributor), Dalmagro, H. J. (Contributor), Dengel, S. (Contributor), Desai, A. R. (Contributor), Detto, M. (Contributor), Dolman, H. (Contributor), Eichelmann, E. (Contributor), Euskirchen, E. (Contributor), Famulari, D. (Contributor), Friborg, T. (Contributor), Fuchs, K. (Contributor), Goeckede, M. (Contributor), Gogo, S. (Contributor), Gondwe, M. J. (Contributor), Goodrich, J. P. (Contributor), Gottschalk, P. (Contributor), Graham, S. L. (Contributor), Heimann, M. (Contributor), Helbig, M. (Contributor), Helfter, C. (Contributor), Hemes, K. S. (Contributor), Hirano, T. (Contributor), Hollinger, D. (Contributor), Hörtnagl, L. (Contributor), Iwata, H. (Contributor), Jacotot, A. (Contributor), Jansen, J. (Contributor), Jurasinski, G. (Contributor), Kang, M. (Contributor), Kasak, K. (Contributor), King, J. (Contributor), Klatt, J. (Contributor), Koebsch, F. (Contributor), Krauss, K. W. (Contributor), Lai, D. Y. F. (Contributor), Mammarella, I. (Contributor), Manca, G. (Contributor), Marchesini, L. B. (Contributor), Matthes, J. H. (Contributor), Merbold, L. (Contributor), Mitra, B. (Contributor), Morin, T. H. (Contributor), Nemitz, E. (Contributor), Nilsson, M. B. (Contributor), Niu, S. (Contributor), Oechel, W. C. (Contributor), Oikawa, P. Y. (Contributor), Peichl, M. (Contributor), Peltola, O. (Contributor), Reba, M. L. (Contributor), Richardson, A. D. (Contributor), Riley, W. (Contributor), Runkle, B. R. K. (Contributor), Ryu, Y. (Contributor), Sachs, T. (Contributor), Sakabe, A. (Contributor), Sanchez, C. R. (Contributor), Schuur, E. A. (Contributor), Schäfer, K. V. R. (Contributor), Sonnentag, O. (Contributor), Sparks, J. P. (Contributor), Stuart-Haëntjens, E. (Contributor), Sturtevant, C. (Contributor), Sullivan, R. C. (Contributor), Szutu, D. J. (Contributor), Thom, J. E. (Contributor), Torn, M. S. (Contributor), Tuittila, E.-S. (Contributor), Turner, J. (Contributor), Ueyama, M. (Contributor), Valach, A. (Contributor), Vargas, R. (Contributor), Varlagin, A. (Contributor), Vazquez-Lule, A. (Contributor), Verfaillie, J. G. (Contributor), Vesala, T. (Contributor), Vourlitis, G. L. (Contributor), Ward, E. (Contributor), Wille, C. (Contributor), Zhang, Z. (Contributor), Zona, D. (Contributor), Windham-Myers, L. (Contributor), Poulter, B. (Contributor) & Jackson, R. B. (Contributor), Zenodo, Jan 4 2021

  DOI: 10.5281/zenodo.4672601, https://zenodo.org/records/4672601

  Dataset

• PhenoCam Dataset v1.0: Vegetation Phenology from Digital Camera Imagery, 2000-2015

  Richardson, A. D. (Contributor), Hufkens, K. (Contributor), Milliman, T. (Contributor), Aubrecht, D. M. (Contributor), Chen, M. (Contributor), Gray, J. M. (Contributor), Johnston, M. R. (Contributor), Keenan, T. F. (Contributor), Klosterman, S. T. (Contributor), Kosmala, M. (Contributor), Melaas, E. K. (Contributor), Friedl, M. A. (Contributor), Frolking, S. (Contributor), BLACK, T. A. (Creator), BLANKEN, P. (Creator), BROWNING, D. (Creator), BRET-HARTE, S. (Creator), BRUNSELL, N. (Creator), BURNS, S. P. (Creator), CREMONESE, E. (Creator), DESAI, A. R. (Creator), EISSENSTAT, D. M. (Creator), FLANAGAN, L. B. (Creator), GALLAGHER, J. (Creator), HOLLINGER, D. Y. (Creator), JONES, J. W. (Creator), LANGVALL, O. (Creator), MCCAUGHEY, J. H. (Creator), MITCHELL, M. J. (Creator), NOORMETS, A. (Creator), NOVICK, K. (Creator), SCOTT, R. L. (Creator), SONNENTAG, O. (Creator) & THOM, J. E. (Creator), ORNL Distributed Active Archive Center, 2017

  DOI: 10.3334/ornldaac/1511, https://daac.ornl.gov/cgi-bin/dsviewer.pl?ds_id=1511

  Dataset

• Data from: Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity

  Bolnick, D. I. (Creator), Snowberg, L. K. (Creator), Caporaso, J. G. (Creator), Lauber, C. (Creator), Knight, R. (Creator), Stutz, W. E. (Creator) & Bolnick, D. (Creator), DRYAD, Jun 27 2014

  DOI: 10.5061/dryad.2s07s, https://datadryad.org/dataset/doi:10.5061/dryad.2s07s

  Dataset

• Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018

  Meisel, J. S. (Creator), Nasko, D. J. (Creator), Brubach, B. (Creator), Cepeda-Espinoza, V. (Creator), Chopyk, J. (Creator), Corrada-Bravo, H. (Contributor), Fedarko, M. (Creator), Ghurye, J. (Creator), Javkar, K. (Creator), Olson, N. D. (Creator), Shah, N. (Creator), Allard, S. M. (Creator), Bazinet, A. L. (Creator), Bergman, N. H. (Creator), Brown, A. (Creator), Caporaso, J. G. (Contributor), Conlan, S. (Creator), Diruggiero, J. (Contributor), Forry, S. P. (Creator), Hasan, N. A. (Creator), Kralj, J. (Creator), Luethy, P. M. (Creator), Milton, D. K. (Creator), Ondov, B. D. (Creator), Preheim, S. (Creator), Ratnayake, S. (Contributor), Rogers, S. M. (Creator), Rosovitz, M. J. (Contributor), Sakowski, E. G. (Creator), Schliebs, N. O. (Creator), Sommer, D. D. (Creator), Ternus, K. L. (Creator), Uritskiy, G. (Contributor), Zhang, S. X. (Creator), Pop, M. (Creator) & Treangen, T. J. (Creator), figshare Academic Research System, 2018

  DOI: 10.6084/m9.figshare.c.4291514.v1, https://figshare.com/collections/Current_progress_and_future_opportunities_in_applications_of_bioinformatics_for_biodefense_and_pathogen_detection_report_from_the_Winter_Mid-Atlantic_Microbiome_Meet-up_College_Park_MD_January_10_2018/4291514/1

  Dataset

• Data from: Quantifying and reducing uncertainties in estimated soil CO2 fluxes with hierarchical data-model integration

  Ogle, K. (Contributor), Ryan, E. (Contributor), Dijkstra, F. A. (Contributor) & Pendall, E. (Contributor), Zenodo, Nov 1 2017

  DOI: 10.5061/dryad.mb605, https://zenodo.org/records/4959755

  Dataset

• Inputs folder contents for DETECT model v1.0

  Ryan, E. (Contributor) & Ogle, K. (Contributor), Zenodo, Sep 22 2017

  DOI: 10.5281/zenodo.926064, https://zenodo.org/record/926064

  Dataset

• Raw soil carbon dioxide, moisture, temperature and micrometeorological data in the East River Watershed, Colorado June 2021-June 2024. (DE-SC0021139)

  Carbone, M. (Creator) & Richardson, A. (Contributor), Environmental System Science Data Infrastructure for a Virtual Ecosystem; Ecohydrological controls on root and microbial respiration in the East River watershed of Colorado, 2024

  DOI: 10.15485/1909712, https://www.osti.gov/servlets/purl/1909712/

  Dataset

• Oligofructose improves small intestinal lipid-sensing mechanisms via alterations to the small intestinal microbiota

  Martinez, T. M. (Creator), Meyer, R. K. (Creator), Vedantam, G. (Creator), Cai, H. (Creator), Lane, A. I. (Creator), Lindsey, J. (Creator), Jaramillo, S. A. (Creator), Hasneen, T. (Creator), Kangath, A. (Creator), Caporaso, J. G. (Creator), Herman, C. (Creator), Duca, F. A. (Creator), Cope, E. K. (Creator) & Weninger, S. N. (Creator), figshare, 2024

  DOI: 10.6084/m9.figshare.c.6772774, https://springernature.figshare.com/collections/Oligofructose_improves_small_intestinal_lipid-sensing_mechanisms_via_alterations_to_the_small_intestinal_microbiota/6772774

  Dataset

• Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018

  Meisel, J. S. (Creator), Nasko, D. J. (Creator), Brubach, B. (Creator), Cepeda-Espinoza, V. (Creator), Chopyk, J. (Creator), Corrada-Bravo, H. (Contributor), Fedarko, M. (Creator), Ghurye, J. (Creator), Javkar, K. (Creator), Olson, N. D. (Creator), Shah, N. (Creator), Allard, S. M. (Creator), Bazinet, A. L. (Creator), Bergman, N. H. (Creator), Brown, A. (Creator), Caporaso, J. G. (Contributor), Conlan, S. (Creator), Diruggiero, J. (Contributor), Forry, S. P. (Creator), Hasan, N. A. (Creator), Kralj, J. (Creator), Luethy, P. M. (Creator), Milton, D. K. (Creator), Ondov, B. D. (Creator), Preheim, S. (Creator), Ratnayake, S. (Contributor), Rogers, S. M. (Creator), Rosovitz, M. J. (Contributor), Sakowski, E. G. (Creator), Schliebs, N. O. (Creator), Sommer, D. D. (Creator), Ternus, K. L. (Creator), Uritskiy, G. (Contributor), Zhang, S. X. (Creator), Pop, M. (Creator) & Treangen, T. J. (Creator), figshare, 2018

  DOI: 10.6084/m9.figshare.c.4291514, https://figshare.com/collections/Current_progress_and_future_opportunities_in_applications_of_bioinformatics_for_biodefense_and_pathogen_detection_report_from_the_Winter_Mid-Atlantic_Microbiome_Meet-up_College_Park_MD_January_10_2018/4291514

  Dataset

• Additional file 5: Dataset S2. of Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

  Kang, D.-W. (Contributor), Adams, J. B. (Creator), Gregory, A. C. (Creator), Borody, T. (Creator), Chittick, L. (Creator), Fasano, A. (Creator), Khoruts, A. (Creator), Geis, E. (Creator), Maldonado, J. (Creator), McDonough-Means, S. (Creator), Pollard, E. L. (Creator), Roux, S. (Creator), Sadowsky, M. J. (Creator), Lipson, K. S. (Creator), Sullivan, M. B. (Creator), Caporaso, J. G. (Contributor) & Krajmalnik-Brown, R. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.c.3674866_d1, https://springernature.figshare.com/articles/dataset/Additional_file_5_Dataset_S2_of_Microbiota_Transfer_Therapy_alters_gut_ecosystem_and_improves_gastrointestinal_and_autism_symptoms_an_open-label_study/4588072

  Dataset

• Additional file 1 of Increased peak detection accuracy in over-dispersed ChIP-seq data with supervised segmentation models

  Rigaill, G. (Creator), Hocking, T. D. (Creator) & Liehrmann, A. (Creator), figshare, 2021

  DOI: 10.6084/m9.figshare.14782689.v1, https://doi.org/10.6084%2Fm9.figshare.14782689.v1

  Dataset