Departments, CEFNS

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• Subtree-grafting python script

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Jiao, J.-Y. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19288391.v1, https://figshare.com/articles/software/Subtree-grafting_python_script/19288391/1

  Dataset

• AAI Rscript

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Jiao, J.-Y. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19288382.v1, https://figshare.com/articles/software/AAI_Rscript/19288382/1

  Dataset

• Taxon collision-checking script.

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.20365317, https://figshare.com/articles/software/Taxon_collision-checking_script_/20365317

  Dataset

• Omnitrophota MAGs IMG contigs

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Jiao, J.-Y. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19288367, https://figshare.com/articles/dataset/Omnitrophota_MAGs_IMG_contigs/19288367

  Dataset

• IQTree model parser Rscript

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Jiao, J.-Y. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19288379, https://figshare.com/articles/software/IQTree_model_parser_Rscript/19288379

  Dataset

• Omnitrophota functional gene trees

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Jiao, J.-Y. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19918438.v1, https://figshare.com/articles/dataset/Omnitrophota_functional_gene_trees/19918438/1

  Dataset

• AAI Rscript

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19288382, https://figshare.com/articles/software/AAI_Rscript/19288382

  Dataset

• Bioturbation increases time averaging despite promoting shell disintegration: a test using anthropogenic gradients in sediment accumulation and burrowing on the southern California shelf

  Kaufman, D. S. (Creator), Wadman, H. M. (Creator), McNinch, J. E. (Creator), Kidwell, S. M. (Creator), Alexander, C. R. (Creator), Dai, R. (Creator), Tomašovych, A. (Contributor), Edie, S. M. (Creator) & Leonard-Pingel, J. S. (Creator), DRYAD, Jul 23 2024

  DOI: 10.5061/dryad.0vt4b8h54, https://datadryad.org/stash/dataset/doi:10.5061/dryad.0vt4b8h54

  Dataset

• Bioturbation increases time averaging despite promoting shell disintegration: a test using anthropogenic gradients in sediment accumulation and burrowing on the southern California shelf

  Dai, R. (Contributor), Kaufman, D. S. (Contributor), Leonard-Pingel, J. S. (Contributor), Tomašovych, A. (Contributor), Edie, S. M. (Contributor), Wadman, H. M. (Contributor), Kidwell, S. M. (Contributor), McNinch, J. E. (Contributor) & Alexander, C. R. (Contributor), Zenodo, Jul 23 2024

  DOI: 10.5281/zenodo.10070064, https://zenodo.org/records/10070064

  Dataset

• Laboratory rat (Rattus norvegicus; Sprague Dawley) from Laryngeal airway reconstruction indicates that rodent ultrasonic vocalizations are produced by an edge-tone mechanism

  Riede, T. (Creator), Borgard, H. L. (Creator) & Pasch, B. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.5549680.v1, https://figshare.com/articles/Laboratory_rat_i_Rattus_norvegicus_i_Sprague_Dawley_from_Laryngeal_airway_reconstruction_indicates_that_rodent_ultrasonic_vocalizations_are_produced_by_an_edge-tone_mechanism/5549680/1

  Dataset

• Additional file 4: of Compositionally and functionally distinct sinus microbiota in chronic rhinosinusitis patients have immunological and clinically divergent consequences

  Cope, E. K. (Creator), Goldberg, A. N. (Creator), Pletcher, S. D. (Creator) & Lynch, S. V. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.c.3777797_d4, https://springernature.figshare.com/articles/dataset/Additional_file_4_of_Compositionally_and_functionally_distinct_sinus_microbiota_in_chronic_rhinosinusitis_patients_have_immunological_and_clinically_divergent_consequences/5001698

  Dataset

• Dataset for: Bedding scale correlation on Mars in western Arabia Terra

  Annex, A. M. (Contributor), Lewis, K. W. (Contributor), Koeppel, A. H. D. (Contributor) & Edwards, C. S. (Contributor), Zenodo, Jan 27 2023

  DOI: 10.5281/zenodo.7577714, https://zenodo.org/record/7577714

  Dataset

• Organic-Matter Accumulation and Degradation in Holocene Permafrost Deposits Along a Central Alaska Hillslope, 2020-2022

  Kaufman, D. (Creator), Anderson, R. S. (Creator), McKay, N. (Creator) & Schuur, E. (Creator), NSF Arctic Data Center, 2023

  DOI: 10.18739/a2f76683d, https://arcticdata.io/catalog/view/doi:10.18739/A2F76683D

  Dataset

• Major and trace element concentrations and Ni isotope compositions of carbonates from the Great Bahama Bank and carbonate diagenesis model parameters

  Rolison, J. M. (Contributor), Wasylenki, L. E. (Contributor), Hardisty, D. S. (Contributor) & Baransky, E. J. (Creator), Mendeley Data, Aug 20 2024

  DOI: 10.17632/w22g2k4t2n.1, https://data.mendeley.com/datasets/w22g2k4t2n

  Dataset

• A novel Sporothrix brasiliensis genomic variant in Midwestern Brazil: evidence for an older and wider sporotrichosis epidemic

  Eudes Filho, J. (Contributor), Santos, I. B. D. (Contributor), Reis, C. M. S. (Creator), Patané, J. S. L. (Creator), Paredes, V. (Creator), Bernardes, J. P. R. A. (Creator), Poggiani, S. D. S. C. (Contributor), Castro, T. D. C. B. (Contributor), Gomez, O. M. (Creator), Pereira, S. A. (Creator), Schubach, E. Y. P. (Creator), Gomes, K. P. (Creator), Mavengere, H. (Creator), Alves, L. G. D. B. (Contributor), Lucas, J. (Creator), Paes, H. C. (Creator), Albuquerque, P. (Creator), Cruz, L. M. (Creator), McEwen, J. G. (Creator), Stajich, J. E. (Creator), Almeida-Paes, R. (Creator), Zancopé-Oliveira, R. M. (Creator), Matute, D. R. (Creator), Barker, B. M. (Creator), Felipe, M. S. S. (Creator), Teixeira, M. D. M. (Contributor) & Nicola, A. M. (Creator), Taylor & Francis, 2023

  DOI: 10.6084/m9.figshare.13313278, https://tandf.figshare.com/articles/dataset/A_novel_i_Sporothrix_brasiliensis_i_genomic_variant_in_Midwestern_Brazil_evidence_for_an_older_and_wider_sporotrichosis_epidemic/13313278

  Dataset

• A look at WH-questions in direct and cross-examinations: Authentic vs. TV courtroom language

  Chen, M. (Contributor) & Reppen, R. (Creator), SciELO journals, 2021

  DOI: 10.6084/m9.figshare.14281083, https://scielo.figshare.com/articles/dataset/A_look_at_WH-questions_in_direct_and_cross-examinations_Authentic_vs_TV_courtroom_language/14281083

  Dataset

• Data from: Implications of non-native species for mutualistic network resistance and resilience

  Aslan, C. E. (Contributor), Zenodo, Jun 13 2019

  DOI: 10.5061/dryad.mm5pv44, https://zenodo.org/records/5008853

  Dataset

• Timing and duration of ephemeral Antarctic water tracks and wetlands using high temporal–resolution satellite imagery, high spatial–resolution satellite imagery, and ground-based sensors in the McMurdo Dry Valleys

  Kuentz, L. (Creator), Levy, J. (Creator) & Salvatore, M. (Creator), Taylor & Francis, 2022

  DOI: 10.6084/m9.figshare.21436504, https://tandf.figshare.com/articles/dataset/Timing_and_duration_of_ephemeral_Antarctic_water_tracks_and_wetlands_using_high_temporal_resolution_satellite_imagery_high_spatial_resolution_satellite_imagery_and_ground-based_sensors_in_the_McMurdo_Dry_Valleys/21436504

  Dataset

• Northern grasshopper mouse (Onychomys leucogaster) from Laryngeal airway reconstruction indicates that rodent ultrasonic vocalizations are produced by an edge-tone mechanism

  Riede, T. (Creator), Borgard, H. L. (Creator) & Pasch, B. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.5549683.v1, https://figshare.com/articles/Northern_grasshopper_mouse_i_Onychomys_leucogaster_i_from_Laryngeal_airway_reconstruction_indicates_that_rodent_ultrasonic_vocalizations_are_produced_by_an_edge-tone_mechanism/5549683/1

  Dataset

• A comparative study of urban occupational structures: Brazil and United States

  Scherer, C. E. M. (Contributor), Do Amaral, P. V. M. (Contributor) & Folch, D. (Creator), SciELO journals, 2020

  DOI: 10.6084/m9.figshare.11930106, https://scielo.figshare.com/articles/A_comparative_study_of_urban_occupational_structures_Brazil_and_United_States/11930106

  Dataset

• Supplementary material from "Grasshopper mice employ distinct vocal production mechanisms in different social contexts"

  Pasch, B. (Creator), Tokuda, I. T. (Creator) & Riede, T. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.c.3820792, https://figshare.com/collections/Supplementary_material_from_Grasshopper_mice_employ_distinct_vocal_production_mechanisms_in_different_social_contexts_/3820792

  Dataset

• Eocene Terrane Accretion in Northern Cascadia Recorded by Brittle Left-lateral Slip on the San Juan Fault

  Harrichhausen, N. (Contributor), Morell, K. (Contributor), Regalla, C. (Contributor), Lynch, E. (Contributor) & Leonard, L. (Contributor), Zenodo, Aug 12 2022

  DOI: 10.25349/D9CD03, https://zenodo.org/records/6991017

  Dataset

• V-Demnotes.txt

  Steele, C. A. (Creator), Pemstein, D. (Creator) & Meserve, S. (Creator), Harvard Dataverse, 2020

  DOI: 10.7910/dvn/my6cvy/k0hhuc, https://dataverse.harvard.edu/file.xhtml?persistentId=doi:10.7910/DVN/MY6CVY/K0HHUC

  Dataset

• sj-csv-3-ips-10.1177_01925121211061241 – Supplemental material for Multi-bilateral aid for disease control

  Steele, C. A. (Creator), SAGE Journals, 2022

  DOI: 10.25384/sage.19288111.v1, https://sage.figshare.com/articles/dataset/sj-csv-3-ips-10_1177_01925121211061241_Supplemental_material_for_Multi-bilateral_aid_for_disease_control/19288111/1

  Dataset

• Support in response to a spouse’s distress: Comparing women and men in same-sex and different-sex marriages

  Thomeer, M. B. (Creator), Pollitt, A. M. (Creator) & Umberson, D. (Creator), SAGE Journals, 2021

  DOI: 10.25384/sage.c.5327033, https://sage.figshare.com/collections/Support_in_response_to_a_spouse_s_distress_Comparing_women_and_men_in_same-sex_and_different-sex_marriages/5327033

  Dataset