Biological Sciences

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• Repeated genetic and adaptive phenotypic divergence across tidal elevation in a foundation plant species

  Zerebecki, R. (Contributor), Sotka, E. E. (Contributor), Hanley, T. C. (Contributor), Bell, K. L. (Contributor), Gehring, C. (Contributor), Nice, C. C. (Contributor), Richards, C. L. (Contributor) & Hughes, A. R. (Contributor), Zenodo, Jun 17 2021

  DOI: 10.5061/dryad.1c59zw3vq, https://zenodo.org/records/4976614

  Dataset

• Omnitrophota 2022

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Jiao, J.-Y. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Moser, D. P. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.c.6010411, https://figshare.com/collections/Omnitrophota_2022/6010411

  Dataset

• Subtree-grafting python script

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Jiao, J.-Y. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19288391, https://figshare.com/articles/software/Subtree-grafting_python_script/19288391

  Dataset

• Omnitrophota 2022

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Jiao, J.-Y. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Moser, D. P. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.c.6010411.v1, https://figshare.com/collections/Omnitrophota_2022/6010411/1

  Dataset

• Subtree-grafting python script

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Jiao, J.-Y. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19288391.v1, https://figshare.com/articles/software/Subtree-grafting_python_script/19288391/1

  Dataset

• AAI Rscript

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Jiao, J.-Y. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19288382.v1, https://figshare.com/articles/software/AAI_Rscript/19288382/1

  Dataset

• Taxon collision-checking script.

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.20365317, https://figshare.com/articles/software/Taxon_collision-checking_script_/20365317

  Dataset

• Omnitrophota MAGs IMG contigs

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Jiao, J.-Y. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19288367, https://figshare.com/articles/dataset/Omnitrophota_MAGs_IMG_contigs/19288367

  Dataset

• IQTree model parser Rscript

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Jiao, J.-Y. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19288379, https://figshare.com/articles/software/IQTree_model_parser_Rscript/19288379

  Dataset

• Omnitrophota functional gene trees

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Jiao, J.-Y. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19918438.v1, https://figshare.com/articles/dataset/Omnitrophota_functional_gene_trees/19918438/1

  Dataset

• AAI Rscript

  Seymour, C. (Creator), Palmer, M. (Creator), Becraft, E. D. (Creator), Stepanauskas, R. (Creator), Friel, A. D. (Creator), Schulz, F. (Creator), Woyke, T. (Creator), Eloe-Fadrosh, E. (Creator), Lai, D. (Creator), Hua, Z.-S. (Creator), Lian, Z.-H. (Creator), Chuvochina, M. (Creator), Finley, B. (Creator), Koch, B. J. (Creator), Hungate, B. A. (Creator) & Hedlund, B. P. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19288382, https://figshare.com/articles/software/AAI_Rscript/19288382

  Dataset

• Laboratory rat (Rattus norvegicus; Sprague Dawley) from Laryngeal airway reconstruction indicates that rodent ultrasonic vocalizations are produced by an edge-tone mechanism

  Riede, T. (Creator), Borgard, H. L. (Creator) & Pasch, B. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.5549680.v1, https://figshare.com/articles/Laboratory_rat_i_Rattus_norvegicus_i_Sprague_Dawley_from_Laryngeal_airway_reconstruction_indicates_that_rodent_ultrasonic_vocalizations_are_produced_by_an_edge-tone_mechanism/5549680/1

  Dataset

• Additional file 4: of Compositionally and functionally distinct sinus microbiota in chronic rhinosinusitis patients have immunological and clinically divergent consequences

  Cope, E. K. (Creator), Goldberg, A. N. (Creator), Pletcher, S. D. (Creator) & Lynch, S. V. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.c.3777797_d4, https://springernature.figshare.com/articles/dataset/Additional_file_4_of_Compositionally_and_functionally_distinct_sinus_microbiota_in_chronic_rhinosinusitis_patients_have_immunological_and_clinically_divergent_consequences/5001698

  Dataset

• Organic-Matter Accumulation and Degradation in Holocene Permafrost Deposits Along a Central Alaska Hillslope, 2020-2022

  Kaufman, D. (Creator), Anderson, R. S. (Creator), McKay, N. (Creator) & Schuur, E. (Creator), NSF Arctic Data Center, 2023

  DOI: 10.18739/a2f76683d, https://arcticdata.io/catalog/view/doi:10.18739/A2F76683D

  Dataset

• A novel Sporothrix brasiliensis genomic variant in Midwestern Brazil: evidence for an older and wider sporotrichosis epidemic

  Eudes Filho, J. (Contributor), Santos, I. B. D. (Contributor), Reis, C. M. S. (Creator), Patané, J. S. L. (Creator), Paredes, V. (Creator), Bernardes, J. P. R. A. (Creator), Poggiani, S. D. S. C. (Contributor), Castro, T. D. C. B. (Contributor), Gomez, O. M. (Creator), Pereira, S. A. (Creator), Schubach, E. Y. P. (Creator), Gomes, K. P. (Creator), Mavengere, H. (Creator), Alves, L. G. D. B. (Contributor), Lucas, J. (Creator), Paes, H. C. (Creator), Albuquerque, P. (Creator), Cruz, L. M. (Creator), McEwen, J. G. (Creator), Stajich, J. E. (Creator), Almeida-Paes, R. (Creator), Zancopé-Oliveira, R. M. (Creator), Matute, D. R. (Creator), Barker, B. M. (Creator), Felipe, M. S. S. (Creator), Teixeira, M. D. M. (Contributor) & Nicola, A. M. (Creator), Taylor & Francis, 2023

  DOI: 10.6084/m9.figshare.13313278, https://tandf.figshare.com/articles/dataset/A_novel_i_Sporothrix_brasiliensis_i_genomic_variant_in_Midwestern_Brazil_evidence_for_an_older_and_wider_sporotrichosis_epidemic/13313278

  Dataset

• Northern grasshopper mouse (Onychomys leucogaster) from Laryngeal airway reconstruction indicates that rodent ultrasonic vocalizations are produced by an edge-tone mechanism

  Riede, T. (Creator), Borgard, H. L. (Creator) & Pasch, B. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.5549683.v1, https://figshare.com/articles/Northern_grasshopper_mouse_i_Onychomys_leucogaster_i_from_Laryngeal_airway_reconstruction_indicates_that_rodent_ultrasonic_vocalizations_are_produced_by_an_edge-tone_mechanism/5549683/1

  Dataset

• Supplementary material from "Grasshopper mice employ distinct vocal production mechanisms in different social contexts"

  Pasch, B. (Creator), Tokuda, I. T. (Creator) & Riede, T. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.c.3820792, https://figshare.com/collections/Supplementary_material_from_Grasshopper_mice_employ_distinct_vocal_production_mechanisms_in_different_social_contexts_/3820792

  Dataset

• A new approach to simulate peat accumulation, degradation and stability in a global land surface scheme (JULES vn5.8_accumulate_soil) for northern and temperate peatlands

  Chadburn, S. E. (Contributor), Burke, E. J. (Contributor), Gallego-Sala, A. V. (Contributor), Smith, N. D. (Contributor), Bret-Harte, M. S. (Contributor), Charman, D. J. (Contributor), Drewer, J. (Contributor), Edgar, C. W. (Contributor), Euskirchen, E. S. (Contributor), Fortuniak, K. (Contributor), Nakhavali, M. (Contributor), Pawlak, W. (Contributor), Schuur, E. A. G. (Contributor), Westermann, S. (Contributor) & Hugelius, G. (Contributor), Zenodo, Oct 5 2021

  DOI: 10.5281/zenodo.5818180, https://zenodo.org/records/5818180

  Dataset

• Data from: Host and pathogen ecology drive the seasonal dynamics of a fungal disease, white-nose syndrome

  Langwig, K. E. (Contributor), Frick, W. F. (Contributor), Reynolds, R. (Contributor), Parise, K. L. (Contributor), Drees, K. P. (Contributor), Hoyt, J. R. (Contributor), Cheng, T. L. (Contributor), Kunz, T. H. (Contributor), Foster, J. T. (Contributor) & Marm, K. A. (Contributor), Zenodo, Nov 13 2014

  DOI: 10.5061/dryad.k4h77, https://zenodo.org/records/5025640

  Dataset

• Resin-sorbed nitrate and ammonium in organic and mineral soils across a tree density gradient in northeastern Siberia, 2015-2016

  Hewitt, R. (Creator), Alexander, H. (Creator), Izbicki, B. (Creator) & Mack, M. (Creator), NSF Arctic Data Center, 2022

  DOI: 10.18739/a2v698d22, https://arcticdata.io/catalog/view/doi:10.18739/A2V698D22

  Dataset

• Plastic responses to hot temperatures homogenize riparian leaf litter, speed decomposition, and reduce detritivores

  Jeplawy, J. (Contributor), Cooper, H. (Contributor), Marks, J. (Contributor), Lindroth, R. (Contributor), Andrews, M. (Contributor), Compson, Z. (Contributor), Gehring, C. (Contributor), Hultine, K. (Contributor), Grady, K. (Contributor), Whitham, T. (Contributor), Allan, G. (Contributor) & Best, R. (Contributor), Zenodo, May 31 2021

  DOI: 10.5061/dryad.31zcrjdkh, https://zenodo.org/records/4885073

  Dataset

• A novel Sporothrix brasiliensis genomic variant in Midwestern Brazil: evidence for an older and wider sporotrichosis epidemic

  Eudes Filho, J. (Contributor), Santos, I. B. D. (Contributor), Reis, C. M. S. (Creator), Patané, J. S. L. (Creator), Paredes, V. (Creator), Bernardes, J. P. R. A. (Creator), Poggiani, S. D. S. C. (Contributor), Castro, T. D. C. B. (Contributor), Gomez, O. M. (Creator), Pereira, S. A. (Creator), Schubach, E. Y. P. (Creator), Gomes, K. P. (Creator), Mavengere, H. (Creator), Alves, L. G. D. B. (Contributor), Lucas, J. (Creator), Paes, H. C. (Creator), Albuquerque, P. (Creator), Cruz, L. M. (Creator), McEwen, J. G. (Creator), Stajich, J. E. (Creator), Almeida-Paes, R. (Creator), Zancopé-Oliveira, R. M. (Creator), Matute, D. R. (Creator), Barker, B. M. (Creator), Felipe, M. S. S. (Creator), Teixeira, M. D. M. (Contributor) & Nicola, A. M. (Creator), Taylor & Francis, 2023

  DOI: 10.6084/m9.figshare.13313278.v2, https://tandf.figshare.com/articles/dataset/A_novel_i_Sporothrix_brasiliensis_i_genomic_variant_in_Midwestern_Brazil_evidence_for_an_older_and_wider_sporotrichosis_epidemic/13313278/2

  Dataset

• Sinks for nitrogen inputs in terrestrial ecosystems: a meta-analysis of 15N tracer field studies

  Templer, P. H. (Contributor), Mack, M. C. (Contributor), Chapin, I. F. S. (Contributor), Christenson, L. M. (Contributor), Compton, J. E. (Contributor), Crook, H. D. (Contributor), Currie, W. S. (Contributor), Curtis, C. J. (Contributor), Dail, D. B. (Contributor), D'Antonio, C. M. (Contributor), Emmett, B. A. (Contributor), Epstein, H. E. (Contributor), Goodale, C. L. (Contributor), Gundersen, P. (Contributor), Hobbie, S. E. (Contributor), Holland, K. (Contributor), Hooper, D. U. (Contributor), Hungate, B. A. (Contributor), Lamontagne, S. (Contributor), Nadelhoffer, K. J. (Contributor), Osenberg, C. W. (Contributor), Perakis, S. S. (Contributor), Schleppi, P. (Contributor), Schimel, J. (Contributor), Schmidt, I. K. (Contributor), Sommerkorn, M. (Contributor), Spoelstra, J. (Contributor), Tietema, A. (Contributor), Wessel, W. W. (Contributor) & Zak, D. R. (Contributor), figshare, 2016

  DOI: 10.6084/m9.figshare.c.3304863, https://figshare.com/collections/Sinks_for_nitrogen_inputs_in_terrestrial_ecosystems_a_meta-analysis_of_sup_15_sup_N_tracer_field_studies/3304863

  Dataset

• Ord's kangaroo rat (Dipodomys ordii) from Laryngeal airway reconstruction indicates that rodent ultrasonic vocalizations are produced by an edge-tone mechanism.

  Riede, T. (Creator), Borgard, H. L. (Creator) & Pasch, B. (Creator), The Royal Society, 2017

  DOI: 10.6084/m9.figshare.5549662, https://rs.figshare.com/articles/media/Ord_s_kangaroo_rat_i_Dipodomys_ordii_i_from_Laryngeal_airway_reconstruction_indicates_that_rodent_ultrasonic_vocalizations_are_produced_by_an_edge-tone_mechanism/5549662

  Dataset

• Crystal structure of the multidrug efflux transporter BpeB from Burkholderia pseudomallei

  Kato, T. (Contributor), Okada, U. (Contributor), Hung, L.-W. (Contributor), Yamashita, E. (Contributor), Kim, H.-B. (Contributor), Kim, C.-Y. (Contributor), Terwilliger, T. C. (Contributor), Schweizer, H. P. (Contributor) & Murakami, S. (Contributor), Protein Data Bank (PDB), Jul 19 2023

  DOI: 10.2210/pdb7WLS/pdb, https://www.wwpdb.org/pdb?id=pdb_00007wls

  Dataset