pysal/pysal: v24.07rc4

  • Jay Laura (Contributor)
  • Charles Schmidt (Contributor)
  • Luc Anselin (Contributor)
  • Sergio J. Rey (Contributor)
  • Daniel Arribas-Bel (Contributor)
  • Philip J. Stephens (Contributor)
  • Pedro Vasconcelos Maia Do Amaral (Contributor)
  • Eli Knaap (Contributor)
  • David Folch (Contributor)
  • Levi John Wolf (Contributor)
  • Wei Kang (Contributor)
  • Martin Fleischmann (Contributor)
  • Andrew Winslow (Contributor)
  • Taylor M. Oshan (Contributor)
  • Stefanie Lumnitz (Contributor)
  • James D. Gaboardi (Contributor)
  • Ryan K. Zomorrodi (Contributor)
  • Nicholas R. Malizia (Contributor)
  • Omar Khursheed (Contributor)
  • Karl Werner (Contributor)

Dataset

Description

Overall, there were 558 commits that closed 315 issues since our last release on 2024-01-31. Changes by Package libpysal v4.12.0 #757: W to g guide #756: exposing mapping_distance in travel builder #233: [WIP] stop sorting ids by default #299: [WIP] remove Ids attribute #505: New changelog conventions #365: start on perimeter weighting with just pygeos #356: [WIP] initial draft of network weights #626: allow ids in graph when passing sparse #151: network weights #755: add graph from travel network #369: refactor examples #490: Logic for pushing tags to trigger release needs to be revisited #375: pygeos-based contiguity #733: W to g guide #754: DOC: move Graph from experimental to stable API #740: ENH: add xarray interface to Graph #753: make asymmetry computation in Graph summary optional #739: fix higher_order contiguity including lower order #738: BUG: higher_order(lower_order=True) not working in edge cases #742: ENH: add Graph.summary with s0, s1, s2 and similar properties to Graph #752: ENH: add index_pairs to Graph #746: BUG: fix categorical lag for custom index #743: BUG: fix handling of non-isolate self-weights of 0 and order preservation #751: adjust CI env name & add Graph to README #750: update README with mention of Graph #749: update CI env naming conventions #534: Weights sprint planning #444: Does release GHA work? #315: scikit-geometry? #747: ensure that Graph.repr fits to 80 characters #745: added examples to graph #744: test against intel & apple silicon #573: BUG: relative neighbourhood depends on the order of observations #736: [pre-commit.ci] pre-commit autoupdate #737: ENH: use representative_point instead of centroid in Graph plotting #735: Centroid or representative point in graph plotting #698: ENH: Graph IO to classic weights file formats #732: CI: do not xfail momepy in reverse checks #729: Use importlib to implement simport #731: CI: ignore spvcm, add osmnx to env, xfail stuff out of control in reverse dep testing #726: Use fixtures for test data that uses the network #728: DOC: Fix a couple Sphinx warnings #727: DOC: Remove unused mkdocs-jupyter dependency #725: COMPAT: ensure argsort output has a stable order in numpy 2 #724: [CI] precision failure on ubuntu-latest, ci/312-no-optional.yaml [2024-06-19] #723: COMPAT: fix numpy 2.0 incompatibility #722: Failure due to numpy 2.0 deprecation #721: inserted chicagoSDOH as sample data #720: ENH: pass kwargs to buffer in fuzzy_contiguity #695: import libpysal stuck on loading remote examples #718: Add timeout in request to handle off-line use cases in examples #719: COMPAT: remove typing from Graph.describe #716: Categorical spatial lag using the Graph #711: ENH: implement Graph.repr #717: ENH: include Graph.describe() to describe neighbourhood values #529: [DO NOT MERGE] Change to the new sparse arrays and see what breaks #715: PERF: sorting-related improvements in Graph #714: Refactor handling of coincident points in triangulation #713: Co-location issues with Graph triangulation builders #694: ENH: add Graph.build_h3 #667: Build Graph from H3 #710: PERF: don't build coincident lookup if not needed #709: BUG: misaligned weights in the gabriel graph #708: add back numba in Py312 tests #590: check when numba is ready for Python 3.12 #703: DOC: add examples to build_contiguity and build_triangulation #697: REF: minor performance improvements in Graph #704: Added examples to from_dicts and build_knn. #705: DOC: Add examples to build_distance_band #702: DOC: add examples to build_block_contiguity #701: DOC: add example to Graph.to_W #700: DOC: clarify the requirements of the canonical sorting of Graph index #687: Ensure Graph.sparse is robust enough #696: [pre-commit.ci] pre-commit autoupdate #693: Work around GEOS issue in voronoi_frames #691: REF: refactor Graph.to_W to avoid perf bottleneck #672: Graph.to_W is slow #692: COMPAT: compatibility with pandas 3 #678: ENH: geometry agnostic Voronoi based on shapely #665: Interest in Optimal Spatial Matching? #685: REF: remove usage of deprecated cascaded_union #686: TST: resolve FutureWarnings in graph apply tests #684: ImportError: cannot import name 'np' from 'libpysal.common' #683: Bump codecov/codecov-action from 3 to 4 esda v2.6.0 #343: formats, lints, pytest pt. 2 -- test_adbscan.py #341: formats, lints, pytest pt. 1 -- test_{utils,topo}.py #336: xfail for test_G_star_Row_Standardized #331: weird Python 3.10 oldest error #337: remove xtyt & xhyh in shape._second_moa_ring_xplusy() #334: declared but unused xtyt & xhyh in shape._second_moa_ring_xplusy() #339: small factor of moran.Moran_Local_BV.__calc() #333: unused zx in moran.Moran_Local_BV.__calc() #332: drop black - reup linting w/0 Python 3.8 pin #330: we never added a pre-commit-config... #308: formatting -> drop black and adopt ruff #289: Silhouette tests failing under scipy 1.13 #326: ENH: natively support Graph in getisord and gamma modules #296: ENH: natively support Graph in all Geary statistics #295: ENH: natively support Graph in all Join Counts statistics #293: ENH: natively support Graph in moran module #294: Support of Graph #329: min pin for libpysal in README - resolve #319 #319: determine minimal pin for libpysal #328: pin libpysal to 4.12 #327: ENH: natively support Graph in losh and sihouettes modules #325: update chat link -- gitter >> discord #324: update chat from gitter to discord #240: esda implementation problem with new numba version #307: add rtree as optional dependency #311: update dependency pins from SPEC000 #299: NumPy 2.0 - CI failures - AttributeError: ptp #310: update CI matrix for supported Python versions #318: modernize CI matrix & deps #301: ImportError: rtree library must be installed #312: move geopandas requirements #309: CI failure introduced in #306 #304: list rtree in optional requirements? #316: update CI env naming conventions #315: prune CI testing matrix - only test windows & macOS on latest Python #314: sync requirements & versions #313: add plus dependency section in pyproject.toml #321: remove bleeding edge libpysal install from testing.yml #320: Add folium and mapclassify to testing dependencies #317: test against both oldest versions & minimal requirements #322: skip test if rtree not installed optional #306: numpy.math.atan2 -> numpy.atan2 in shape._get_angles() #300: AttributeError: module 'numpy' has no attribute 'math' #303: test against mac os intel chip, etc. #302: add explicit Mac intel testing environment #298: remove .coveragerc - info in pyproject.toml #297: remove .gitattributes - no longer using versioneer #286: Adding coverage for vec_permutations #290: import failure- likely due to scipy 1.13 and 1.12 #288: DOC: fix adbscan reference #287: A-DBSCAN citation not generated in docs #285: 311-dev CI failures [2024-03-16] #284: Importing esda: need for update on numpy long #282: landing page notebook links are broken #283: Update link to notebooks on landing page #280: Bump codecov/codecov-action from 3 to 4 pointpats v2.5.0 #140: update min supported Python and testing workflow #141: bump & sync min reqs [2024-06] #139: minimum support Python [2024-06] #138: fix typo in random.normal function #133: REF: reimplement mrr on top of shapely #136: localknox #137: Typo in random.normal method that results in errors #134: keep members of local knox hotspots spaghetti v1.7.6 #771: #770 -- doctests after full tests #770: doctests as separate action or workflow #769: update docstring tests -- numpy-2.0 failures #767: current CI failures [2024-06-19] #768: fix doctests in CI -- numpy 2.0 #765: [pre-commit.ci] pre-commit autoupdate #764: gpd & shp as hard reqs -- no optional testing -- #763 #763: 310-no-optional CI failures [2024-03-16] #762: 312-dev CI failures [2024-03-16] #761: Bump codecov/codecov-action from 3 to 4 momepy v0.7.2 #625: DOC: update user guide to avoid MultiIndex #631: DOC: update rest of the guide #628: DOC: User guide fixes for elements examples #626: REF: remove result_index attribute from describe_agg #627: REF: do not return building_id from generate_blocks #606: BUG: verify handling of MultiIndex #622: ENH: either support MultiIndex or raise an error when one is given #624: DOC: update docstrings to match numpy2 outputs #623: TYP: add type hints to the graph module #579: API: distinction between libpysal and networkx graphs #621: BUG: fix a case when there's only a single building to be passed to voronoi_frames #620: ENH: add mean_deviation #619: API: deprecate legacy API in favour of Graph-based functional implementation #612: API: deprecate legacy API #618: minor type hinting fix #617: API: allow silencing of FutureWarnings from legacy API #616: DOC: expose get_nearest_node, fix fmt #615: DOC: remaining examples in the new API #610: DOC: add examples #614: update precommit to ruff docs dir #613: DOC: ruff user guide #611: DOC: add first batch of examples + testing #609: Faster node density #608: BUG: fix describe_ function when count is not present #543: GHA: switch to autogenerated release notes #582: BUG/ENH: support custom enclosure index is in tessellation and GeoDataFrame as enclosure input #592: DOC: add citation.cff #544: DOC: update dev installation instructions #576: functional node_density implementation #575: functional reached calculations #572: functional courtyards calculation #570: ENH: describe as a replacement of AverageCharacter #566: ENH: street_alignment and get_nearest_street #559: ENH: refactor tessellation #557: ENH: add neighbors #556: ENH: mean_interbuilding_distance and building_adjacency #555: ENH: neighbor_distance using Graph and new API #554: ENH: add alignment to the new API #553: ENH: add orientation and shared_walls functional versions #600: ENH: add get_nearest_node #593: Street profile #590: ENH: adaptive buffer as a tessellation limit #589: Functional percentiles #588: Functional distribution #587: Functional dimension #586: Functional density #584: _describe API refactoring #583: Functional arearatio #581: Functional diversity #580: Functional blocks #607: Update release.yml - troubleshoot release action failure #604: gha for release notes - #543 #396: ENH: helper functions for geometry-based network simplification #461: TestDistribution.test_MeanInterbuildingDistance failure on dev #304: Add GitHub Action to build and push container #537: BUG: tessellation may produce overlapping polygons #261: EHN: Add SkyViewFactor #603: DOC: execute notebooks and ensure they're tested #264: ENH: Simple Building Volume Density #465: ENH: helper functions part 1 #562: test efficiency of graphblas in straightness #602: API: return morphological tessellation as a GeoDataFrame #601: DOC: create usable env on RTD, update clustering #599: DOC: User guide refresh #598: DOC: note on a precision issue in enclosed_tessellation #597: DOC: rework API docs around the new functional stuff #596: COMPAT: numpy 2.0 compatibility #585: Functional count #594: DEP: bump libpysal minimum to 4.11 #406: API: deprecation decorators for transition to functional API #317: Add citation.cff #310: ENH: refactor get_network_id based on sindex.nearest_all #359: Add osmnx_like keyword to gdf_to_nx #478: Enclosure function does not work correctly #525: Networkx deprecations #497: Resolve geopandas deprecations #577: more complete linting & formatting - docs & benchmarks #578: linting & formatting for benchmarks/* and docs/* spreg v1.5.0 #138: Minor adjustments to printouts and spatial impacts #136: Version 1.5 #137: Update unittests.yml -- manual trigger #130: Bump actions/github-script from 6 to 7 #131: Bump conda-incubator/setup-miniconda from 2 to 3 #133: Bump actions/cache from 3 to 4 #134: Bump codecov/codecov-action from 3 to 4 mapclassify v2.7.0 #211: WIP classify to rgba #216: plot histogram with class bins #221: [pre-commit.ci] pre-commit autoupdate #215: Add monthly downloads badge to README #217: doctest failures [2024-06-23] #220: CI: test against Python 3.12 #219: CI: doctest only on ubuntu latest #218: CI: ensure 3.9 envs are compatible #214: [CI] failing dev from libpysal.graph --> numpy.float_ #210: COMPAT: make greedy compatible with future #209: 311-dev CI failures [2024-04-01] #208: [pre-commit.ci] pre-commit autoupdate #207: 311-dev CI failures [2024-03-16] #206: Bump codecov/codecov-action from 3 to 4 spopt v0.6.1 #457: fix numpy=2.0.0 compat -- #456 #456: numpy>=2.0 failures -- [2024-06-19] #454: add OR_classic_problem to README #449: testing code cleanup #452: numpy DeprecationWarning within pyproj #451: codecov acting up a bit – update action #450: "Generate and publish the report" not working - remove #448: better raises/warns control + DRY out testing #453: FutureWarning: The 'unary_union' attribute is deprecated – ignore for now? #437: work on resolving warning in CI (2024-01) #447: Fix service radius in LSCP GIS notebook #446: Unable to run through LSCP example #445: [pre-commit.ci] pre-commit autoupdate #444: re- lint & re-format repo – #438 #438: lint spopt/tests/* #443: 312-dev CI failures [2024-03-17] pysal v24.07rc4 #1343: Move release tooling to modules out of notebooks #1344: Move build tooling into scripts and remove notebooks #1342: Update release tooling for 24.01rc2 #1332: Fix README.md package links #1336: PR template & contrib updates #1335: update PULL_REQUEST_TEMPLATE.md #1334: update chat link in CONTRIBUTING.md #1329: explicit intel chip test for macOS #1328: update README format badge #1327: update black -> ruff badge on README #1188: new open-source alternative to GitHub #1164: spatialpandas? #1301: Pin on dependencies #1325: Update build instructions in tools #1326: prune tools dir - #1320 #1320: pruning the tools/ directory #1321: release action update & general cleaning up #1319: remove gitreleases.ipynb? #1318: remove MIGRATING.md? #1317: need for Makefile? #1316: remove .coveragerc #1315: remove MANIFEST.in #1314: remove requirements*.txt files #1313: update release_and_publish.yml #1312: 24.07rc1 #1306: remove legacy ci/travis/38-latest-conda-forge.yaml #1307: migrate from setup.py, etc. to consolidated pyproject.toml #1311: Fix doc build #1294: TypeError: float() argument must be a string or a number, not 'Point' #1275: PySAL GSOC 2023 #1258: GSoC 2022 Interfaces for Consistent API Design: Library-wide Discussion #1254: Spatiol Temporal Prediction #1246: Move to single directory and auto generate/publish docs #1299: update unittests.yml workflow #1310: add action for building docs #1305: ci update #1308: Dead link alert #1309: Fix nb links #1198: Fedora 33 with LLVM 11 and Python 3.9 breaks giddy and splot installation #1302: pin packages in requirements.txt #1303: Bump softprops/action-gh-release from 1 to 2 #1297: update chat links: gitter >> discord Contributors Many thanks to all of the following individuals who contributed to this release: Anastassiavybornova Anna Brazdova Daniela Dančejová Eli Knaap Elliott Sales De Andrade Germano Barcelos James Gaboardi Krasen Samardzhiev Levi John Wolf Lisa Luc Anselin Marek Novotný Martin Fleischmann Pedro Amaral Ryanzomorrodi Serge Rey Stevee404
Date made availableJul 22 2024
PublisherZenodo

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