Additional file 5: Figure S2. of Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

  • Rafael A. Fernández (Contributor)
  • Charles H D Williamson (Contributor)
  • Miia Lindström (Contributor)
  • Theresa J. Smith (Contributor)
  • Jeffrey Foster (University of New Hampshire, Northern Arizona University) (Contributor)
  • Brian T. Foley (Contributor)
  • Leonard A. Smith (Contributor)
  • Hannu Korkeala (Contributor)
  • Paul Keim (Northern Arizona University) (Contributor)
  • Gary Xie (Contributor)
  • Karen Hill (Contributor)
  • Jason W. Sahl (Contributor)

Dataset

Description

Group I concatenated MLST gene phylogeny. Phylogeny of aligned (MUSCLE [57]) and concatenated MLST genes for Group I genomes inferred with FastTree2 [54]. The MLST profile included aceK, aroE, hsp60, mdh, oppB, recA and rpoB [21]. Taxa labeled ST are 83 sequence types available from PubMLST [77, 78]. Investigation of the concatenated MLST gene phylogeny suggests that diverse BoNT-producing strains have yet to be whole genome sequenced. (PDF 31 kb)
Date made availableJan 1 2016
Publisherfigshare Academic Research System

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